|
|
|
|
| |
| source("product/MPI/src/summarize_map.R") |
|
|
|
|
| check_function_prediction_pivot <- function(dataset_tag, verbose = FALSE) { |
|
|
| if (verbose) { |
| "Checking function prediction pivot for dataset ", dataset_tag, "\n", sep = "") |
| } |
| dataset_long <- arrow::read_parquet( |
| paste0("intermediate/", dataset_tag, "_function_predictions.parquet")) |
|
|
| dataset_wide <- dataset_long |> |
| dplyr::select(-term_name) |> |
| tidyr::pivot_wider( |
| id_cols = id, |
| names_from = term_id, |
| values_from = Y_hat) |
|
|
| sum(is.na(dataset_wide)) |
| } |
|
|
| check_function_prediction_pivot("rosetta_high_quality") |
| check_function_prediction_pivot("rosetta_low_quality") |
| check_function_prediction_pivot("dmpfold_high_quality") |
| check_function_prediction_pivot("dmpfold_low_quality") |
|
|
|
|
|
|
| check_id_consistency <- function(dataset_tag, verbose = FALSE) { |
| if (verbose) { |
| cat("Loading model ids...\n") |
| } |
| ids_model <- arrow::read_parquet( |
| paste0("intermediate/", dataset_tag, "_models.parquet"), |
| col_select = "id") |
|
|
| if (verbose) { |
| cat("Loading function prediction ids...\n") |
| } |
| ids_anno <- arrow::read_parquet( |
| paste0("intermediate/", dataset_tag, "_function_predictions.parquet"), |
| col_select = "id") |> |
| dplyr::distinct(id) |
|
|
| problems <- dplyr::full_join( |
| ids_model |> |
| dplyr::mutate(model_id = id), |
| ids_anno |> |
| dplyr::mutate(anno_id = id), |
| by = "id") |> |
| summarize_map( |
| x_cols = model_id, |
| y_cols = anno_id, |
| verbose = verbose) |
| problems |
| } |
|
|
| check_id_consistency("rosetta_high_quality") |
| check_id_consistency("rosetta_low_quality") |
| check_id_consistency("dmpfold_high_quality") |
| check_id_consistency("dmpfold_low_quality") |
|
|
