def run_arxiv_cleaner(parameters):
  """Core of the code, runs the actual arXiv cleaner."""

  files_to_delete = [ # [STATE] files_to_delete = ['\\.aux$', '\\.sh$', '\\.blg$', '\\.brf$', '\\.log$', '\\.out$', '\\.ps$', '\\.dvi$', '\\.synctex.gz$', '~$', '\\.backup$', '\\.gitignore$', '\\.DS_Store$', '\\.svg$', '^\\.idea', '\\.dpth$', '\\.md5$', '\\.dep$', '\\.auxlock$', '\\.fls$', '\\.fdb_latexmk$'] [/STATE]
      r'\.aux$',
      r'\.sh$',
      r'\.blg$',
      r'\.brf$',
      r'\.log$',
      r'\.out$',
      r'\.ps$',
      r'\.dvi$',
      r'\.synctex.gz$',
      '~$',
      r'\.backup$',
      r'\.gitignore$',
      r'\.DS_Store$',
      r'\.svg$',
      r'^\.idea',
      r'\.dpth$',
      r'\.md5$',
      r'\.dep$',
      r'\.auxlock$',
      r'\.fls$',
      r'\.fdb_latexmk$',
  ]

  if not parameters['keep_bib']:
    files_to_delete.append(r'\.bib$') # [STATE] files_to_delete = ['\\.aux$', '\\.sh$', '\\.blg$', '\\.brf$', '\\.log$', '\\.out$', '\\.ps$', '\\.dvi$', '\\.synctex.gz$', '~$', '\\.backup$', '\\.gitignore$', '\\.DS_Store$', '\\.svg$', '^\\.idea', '\\.dpth$', '\\.md5$', '\\.dep$', '\\.auxlock$', '\\.fls$', '\\.fdb_latexmk$', '\\.bib$'] [/STATE]

  parameters.update({ # [STATE] parameters = {'input_folder': 'tex', 'images_allowlist': {'images/im2_included.jpg': 200, 'images/im3_included.png': 400}, 'resize_images': True, 'im_size': 100, 'compress_pdf': False, 'pdf_im_resolution': 500, 'commands_to_delete': ['mytodo'], 'commands_only_to_delete': ['red'], 'environments_to_delete': ['mynote'], 'use_external_tikz': 'ext_tikz', 'keep_bib': False, 'to_delete': ['\\.aux$', '\\.sh$', '\\.blg$', '\\.brf$', '\\.log$', '\\.out$', '\\.ps$', '\\.dvi$', '\\.synctex.gz$', '~$', '\\.backup$', '\\.gitignore$', '\\.DS_Store$', '\\.svg$', '^\\.idea', '\\.dpth$', '\\.md5$', '\\.dep$', '\\.auxlock$', '\\.fls$', '\\.fdb_latexmk$', '\\.bib$'], 'figures_to_copy_if_referenced': ['\\.png$', '\\.jpg$', '\\.jpeg$', '\\.pdf$']} [/STATE]
      'to_delete': files_to_delete,
      'figures_to_copy_if_referenced': [
          r'\.png$',
          r'\.jpg$',
          r'\.jpeg$',
          r'\.pdf$',
      ],
  })

  logging.info('Collecting file structure.')
  parameters['output_folder'] = _create_out_folder(parameters['input_folder']) # [STATE] parameters = {'input_folder': 'tex', 'images_allowlist': {'images/im2_included.jpg': 200, 'images/im3_included.png': 400}, 'resize_images': True, 'im_size': 100, 'compress_pdf': False, 'pdf_im_resolution': 500, 'commands_to_delete': ['mytodo'], 'commands_only_to_delete': ['red'], 'environments_to_delete': ['mynote'], 'use_external_tikz': 'ext_tikz', 'keep_bib': False, 'to_delete': ['\\.aux$', '\\.sh$', '\\.blg$', '\\.brf$', '\\.log$', '\\.out$', '\\.ps$', '\\.dvi$', '\\.synctex.gz$', '~$', '\\.backup$', '\\.gitignore$', '\\.DS_Store$', '\\.svg$', '^\\.idea', '\\.dpth$', '\\.md5$', '\\.dep$', '\\.auxlock$', '\\.fls$', '\\.fdb_latexmk$', '\\.bib$'], 'figures_to_copy_if_referenced': ['\\.png$', '\\.jpg$', '\\.jpeg$', '\\.pdf$'], 'output_folder': '/local/rcs/XXX/code/pytrace-collector/logs/self_collected/tried/google-research+arxiv-latex-cleaner/google-research+arxiv-latex-cleaner/tex_arXiv'} [/STATE]

  from_zip = parameters['input_folder'].endswith('.zip') # [STATE] from_zip = False [/STATE]
  tempdir_context = ( # [STATE] tempdir_context = {_exceptions=()} [/STATE]
      tempfile.TemporaryDirectory() if from_zip else contextlib.suppress()
  )

  with tempdir_context as tempdir: # [STATE] tempdir = None [/STATE]

    if from_zip:
      logging.info('Unzipping input folder.')
      shutil.unpack_archive(parameters['input_folder'], tempdir)
      parameters['input_folder'] = tempdir

    splits = _split_all_files(parameters) # [STATE] splits = {'all': ['main.bib', 'main.bbl', 'main.tex', 'main.aux', 'ext_tikz/test2.pdf', 'ext_tikz/test1.pdf', 'ext_tikz/figure_not_included.pdf', 'figures/data_not_included.txt', 'figures/figure_not_included.tex', 'figures/figure_not_included_2.tex', 'figures/figure_included.tikz', 'figures/figure_included.tex', 'figures/data_included.txt', 'not_included/figures/data_included.txt', 'images/im4_included.png', 'images/im1.png', 'images/im4_not_included.png', 'images/im3_included.png', 'images/im2_included.jpg', 'images/im5_not_included.jpg', 'images/im5_included.jpg', 'images/im1_included.png', 'images/im_not_included.png', 'images/include/images/im3_included.png'], 'in_root': ['main.bib', 'main.bbl', 'main.tex', 'main.aux'], 'not_in_root': ['ext_tikz/test2.pdf', 'ext_tikz/test1.pdf', 'ext_tikz/figure_not_included.pdf', 'figures/data_not_included.txt', 'figures/figure_not_included.tex', 'figures/figure_not_included_2.tex', 'figures/figure_included.tikz', 'figures/figure_included.tex', 'figures/data_included.txt', 'not_included/figures/data_included.txt', 'images/im4_included.png', 'images/im1.png', 'images/im4_not_included.png', 'images/im3_included.png', 'images/im2_included.jpg', 'images/im5_not_included.jpg', 'images/im5_included.jpg', 'images/im1_included.png', 'images/im_not_included.png', 'images/include/images/im3_included.png'], 'to_copy_in_root': ['main.bbl', 'main.tex'], 'to_copy_not_in_root': ['figures/data_not_included.txt', 'figures/figure_not_included.tex', 'figures/figure_not_included_2.tex', 'figures/figure_included.tikz', 'figures/figure_included.tex', 'figures/data_included.txt', 'not_included/figures/data_included.txt'], 'figures': ['ext_tikz/test2.pdf', 'ext_tikz/test1.pdf', 'ext_tikz/figure_not_included.pdf', 'images/im4_included.png', 'images/im1.png', 'images/im4_not_included.png', 'images/im3_included.png', 'images/im2_included.jpg', 'images/im5_not_included.jpg', 'images/im5_included.jpg', 'images/im1_included.png', 'images/im_not_included.png', 'images/include/images/im3_included.png'], 'tex_in_root': ['main.tex'], 'tex_not_in_root': ['figures/figure_not_included.tex', 'figures/figure_not_included_2.tex', 'figures/figure_included.tikz', 'figures/figure_included.tex'], 'non_tex_in_root': ['main.bbl'], 'non_tex_not_in_root': ['figures/data_not_included.txt', 'figures/data_included.txt', 'not_included/figures/data_included.txt'], 'external_tikz_figures': ['ext_tikz/test2.pdf', 'ext_tikz/test1.pdf', 'ext_tikz/figure_not_included.pdf'], 'svg_inkscape': []} [/STATE]

    logging.info('Reading all tex files')
    tex_contents = _read_all_tex_contents( # [STATE] tex_contents = {'main.tex': ['\\begin{document}\n', 'Text\n', '% Whole line comment\n', '\n', 'Text% Inline comment\n', '\\begin{comment}\n', 'This is an environment comment.\n', '\\end{comment}\n', '\n', 'This is a percent \\%.\n', '% Whole line comment without newline\n', '\\includegraphics{images/im1_included.png}\n', '%\\includegraphics{images/im_not_included}\n', '\\includegraphics{images/im3_included.png}\n', '\\includegraphics{%\n', '  images/im4_included.png%\n', '  }\n', '\\includegraphics[width=.5\\linewidth]{%\n', '  images/im5_included.jpg}\n', '%\\includegraphics{%\n', '%  images/im4_not_included.png\n', '%  }\n', '%\\includegraphics[width=.5\\linewidth]{%\n', '%  images/im5_not_included.jpg}\n', '\n', '% test whatever the path satrting with dot works when include graphics\n', '\\includegraphics{./images/im3_included.png}\n', '\n', 'This line should\\mytodo{Do this later} not be separated\n', '\\mytodo{This is a todo command with a nested \\textit{command}.\n', 'Please remember that up to \\texttt{2 levels} of \\textit{nesting} are supported.}\n', 'from this one.\n', '\n', '\\begin{mynote}\n', '  This is a custom environment that could be excluded.\n', '\\end{mynote}\n', '\n', '\\newif\\ifvar\n', '\n', '\\ifvar\n', '\\if    false\n', '\\if false\n', '\\if 0\n', '\\iffalse\n', '\\ifvar\n', 'Text\n', '\\fi\n', '\\fi\n', '\\fi\n', '\\fi\n', '\\fi\n', '\\fi\n', '\n', '\\newcommand{\\red}[1]{{\\color{red} #1}}\n', 'hello test \\red{hello\n', 'test \\red{hello}}\n', 'test\n', '\n', '% content after this line should not be cleaned if \\end{document} is in a comment\n', '\n', '\\input{figures/figure_included.tex}\n', '% \\input{figures/figure_not_included.tex}\n', '\n', '% Test for tikzpicture feature\n', '% should be replaced\n', '\\tikzsetnextfilename{test1}\n', '\\begin{tikzpicture}\n', '    \\node (test) at (0,0) {Test1};\n', '\\end{tikzpicture}\n', '\n', '% should be replaced in included file\n', '\\input{figures/figure_included.tikz}\n', '\n', '% should not be be replaced - no preceding tikzsetnextfilename command\n', '\\begin{tikzpicture}\n', '    \\node (test) at (0,0) {Test3};\n', '\\end{tikzpicture}\n', '\n', '\\tikzsetnextfilename{test_no_match}\n', '\\begin{tikzpicture}\n', '    \\node (test) at (0,0) {Test4};\n', '\\end{tikzpicture}\n', '\n', '\\end{document}\n'], 'figures/figure_not_included.tex': ['\\addplot{figures/data_not_included.txt}\n', '\\input{figures/figure_not_included_2.tex}\n'], 'figures/figure_not_included_2.tex': [], 'figures/figure_included.tikz': ['\ufeff\\tikzsetnextfilename{test2}\n', '\\begin{tikzpicture}\n', '\\node {root}\n', 'child {node {left}}\n', 'child {node {right}\n', 'child {node {child}}\n', 'child {node {child}}\n', '};\n', '\\end{tikzpicture}'], 'figures/figure_included.tex': ['\\includegraphics{images/im2_included.jpg}\n', '\\addplot{figures/data_included.txt}\n']} [/STATE]
        splits['tex_in_root'] + splits['tex_not_in_root'], parameters
    )

    for tex_file in tex_contents: #  [STATE] tex_file = 'main.tex' [/STATE] [STATE] tex_file = 'figures/figure_not_included.tex' [/STATE] [STATE] tex_file = 'figures/figure_not_included_2.tex' [/STATE] [STATE] tex_file = 'figures/figure_included.tikz' [/STATE] [STATE] tex_file = 'figures/figure_included.tex' [/STATE]
      logging.info('Removing comments in file %s.', tex_file)
      tex_contents[tex_file] = _remove_comments_and_commands_to_delete( #  [STATE] tex_contents = {'main.tex': '\\begin{document}\nText\n\nText%\n\n\nThis is a percent \\%.\n\\includegraphics{images/im1_included.png}\n\\includegraphics{images/im3_included.png}\n\\includegraphics{%\n  images/im4_included.png%\n  }\n\\includegraphics[width=.5\\linewidth]{%\n  images/im5_included.jpg}\n\n\\includegraphics{./images/im3_included.png}\n\nThis line should not be separated\n%\nfrom this one.\n\n\n\n\\newif\\ifvar\n\n\\ifvar\n\\fi\n\n\\newcommand{\\red}[1]{{\\color{red} #1}}\nhello test hello\ntest hello\ntest\n\n\n\\input{figures/figure_included.tex}\n\n\\tikzsetnextfilename{test1}\n\\begin{tikzpicture}\n    \\node (test) at (0,0) {Test1};\n\\end{tikzpicture}\n\n\\input{figures/figure_included.tikz}\n\n\\begin{tikzpicture}\n    \\node (test) at (0,0) {Test3};\n\\end{tikzpicture}\n\n\\tikzsetnextfilename{test_no_match}\n\\begin{tikzpicture}\n    \\node (test) at (0,0) {Test4};\n\\end{tikzpicture}\n\n\\end{document}\n', 'figures/figure_not_included.tex': ['\\addplot{figures/data_not_included.txt}\n', '\\input{figures/figure_not_included_2.tex}\n'], 'figures/figure_not_included_2.tex': [], 'figures/figure_included.tikz': ['\ufeff\\tikzsetnextfilename{test2}\n', '\\begin{tikzpicture}\n', '\\node {root}\n', 'child {node {left}}\n', 'child {node {right}\n', 'child {node {child}}\n', 'child {node {child}}\n', '};\n', '\\end{tikzpicture}'], 'figures/figure_included.tex': ['\\includegraphics{images/im2_included.jpg}\n', '\\addplot{figures/data_included.txt}\n']} [/STATE] [STATE] tex_contents = {'main.tex': '\\begin{document}\nText\n\nText%\n\n\nThis is a percent \\%.\n\\includegraphics{images/im1_included.png}\n\\includegraphics{images/im3_included.png}\n\\includegraphics{%\n  images/im4_included.png%\n  }\n\\includegraphics[width=.5\\linewidth]{%\n  images/im5_included.jpg}\n\n\\includegraphics{./images/im3_included.png}\n\nThis line should not be separated\n%\nfrom this one.\n\n\n\n\\newif\\ifvar\n\n\\ifvar\n\\fi\n\n\\newcommand{\\red}[1]{{\\color{red} #1}}\nhello test hello\ntest hello\ntest\n\n\n\\input{figures/figure_included.tex}\n\n\\tikzsetnextfilename{test1}\n\\begin{tikzpicture}\n    \\node (test) at (0,0) {Test1};\n\\end{tikzpicture}\n\n\\input{figures/figure_included.tikz}\n\n\\begin{tikzpicture}\n    \\node (test) at (0,0) {Test3};\n\\end{tikzpicture}\n\n\\tikzsetnextfilename{test_no_match}\n\\begin{tikzpicture}\n    \\node (test) at (0,0) {Test4};\n\\end{tikzpicture}\n\n\\end{document}\n', 'figures/figure_not_included.tex': '\\addplot{figures/data_not_included.txt}\n\\input{figures/figure_not_included_2.tex}\n', 'figures/figure_not_included_2.tex': [], 'figures/figure_included.tikz': ['\ufeff\\tikzsetnextfilename{test2}\n', '\\begin{tikzpicture}\n', '\\node {root}\n', 'child {node {left}}\n', 'child {node {right}\n', 'child {node {child}}\n', 'child {node {child}}\n', '};\n', '\\end{tikzpicture}'], 'figures/figure_included.tex': ['\\includegraphics{images/im2_included.jpg}\n', '\\addplot{figures/data_included.txt}\n']} [/STATE] [STATE] tex_contents = {'main.tex': '\\begin{document}\nText\n\nText%\n\n\nThis is a percent \\%.\n\\includegraphics{images/im1_included.png}\n\\includegraphics{images/im3_included.png}\n\\includegraphics{%\n  images/im4_included.png%\n  }\n\\includegraphics[width=.5\\linewidth]{%\n  images/im5_included.jpg}\n\n\\includegraphics{./images/im3_included.png}\n\nThis line should not be separated\n%\nfrom this one.\n\n\n\n\\newif\\ifvar\n\n\\ifvar\n\\fi\n\n\\newcommand{\\red}[1]{{\\color{red} #1}}\nhello test hello\ntest hello\ntest\n\n\n\\input{figures/figure_included.tex}\n\n\\tikzsetnextfilename{test1}\n\\begin{tikzpicture}\n    \\node (test) at (0,0) {Test1};\n\\end{tikzpicture}\n\n\\input{figures/figure_included.tikz}\n\n\\begin{tikzpicture}\n    \\node (test) at (0,0) {Test3};\n\\end{tikzpicture}\n\n\\tikzsetnextfilename{test_no_match}\n\\begin{tikzpicture}\n    \\node (test) at (0,0) {Test4};\n\\end{tikzpicture}\n\n\\end{document}\n', 'figures/figure_not_included.tex': '\\addplot{figures/data_not_included.txt}\n\\input{figures/figure_not_included_2.tex}\n', 'figures/figure_not_included_2.tex': '', 'figures/figure_included.tikz': ['\ufeff\\tikzsetnextfilename{test2}\n', '\\begin{tikzpicture}\n', '\\node {root}\n', 'child {node {left}}\n', 'child {node {right}\n', 'child {node {child}}\n', 'child {node {child}}\n', '};\n', '\\end{tikzpicture}'], 'figures/figure_included.tex': ['\\includegraphics{images/im2_included.jpg}\n', '\\addplot{figures/data_included.txt}\n']} [/STATE] [STATE] tex_contents = {'main.tex': '\\begin{document}\nText\n\nText%\n\n\nThis is a percent \\%.\n\\includegraphics{images/im1_included.png}\n\\includegraphics{images/im3_included.png}\n\\includegraphics{%\n  images/im4_included.png%\n  }\n\\includegraphics[width=.5\\linewidth]{%\n  images/im5_included.jpg}\n\n\\includegraphics{./images/im3_included.png}\n\nThis line should not be separated\n%\nfrom this one.\n\n\n\n\\newif\\ifvar\n\n\\ifvar\n\\fi\n\n\\newcommand{\\red}[1]{{\\color{red} #1}}\nhello test hello\ntest hello\ntest\n\n\n\\input{figures/figure_included.tex}\n\n\\tikzsetnextfilename{test1}\n\\begin{tikzpicture}\n    \\node (test) at (0,0) {Test1};\n\\end{tikzpicture}\n\n\\input{figures/figure_included.tikz}\n\n\\begin{tikzpicture}\n    \\node (test) at (0,0) {Test3};\n\\end{tikzpicture}\n\n\\tikzsetnextfilename{test_no_match}\n\\begin{tikzpicture}\n    \\node (test) at (0,0) {Test4};\n\\end{tikzpicture}\n\n\\end{document}\n', 'figures/figure_not_included.tex': '\\addplot{figures/data_not_included.txt}\n\\input{figures/figure_not_included_2.tex}\n', 'figures/figure_not_included_2.tex': '', 'figures/figure_included.tikz': '\ufeff\\tikzsetnextfilename{test2}\n\\begin{tikzpicture}\n\\node {root}\nchild {node {left}}\nchild {node {right}\nchild {node {child}}\nchild {node {child}}\n};\n\\end{tikzpicture}\n', 'figures/figure_included.tex': ['\\includegraphics{images/im2_included.jpg}\n', '\\addplot{figures/data_included.txt}\n']} [/STATE] [STATE] tex_contents = {'main.tex': '\\begin{document}\nText\n\nText%\n\n\nThis is a percent \\%.\n\\includegraphics{images/im1_included.png}\n\\includegraphics{images/im3_included.png}\n\\includegraphics{%\n  images/im4_included.png%\n  }\n\\includegraphics[width=.5\\linewidth]{%\n  images/im5_included.jpg}\n\n\\includegraphics{./images/im3_included.png}\n\nThis line should not be separated\n%\nfrom this one.\n\n\n\n\\newif\\ifvar\n\n\\ifvar\n\\fi\n\n\\newcommand{\\red}[1]{{\\color{red} #1}}\nhello test hello\ntest hello\ntest\n\n\n\\input{figures/figure_included.tex}\n\n\\tikzsetnextfilename{test1}\n\\begin{tikzpicture}\n    \\node (test) at (0,0) {Test1};\n\\end{tikzpicture}\n\n\\input{figures/figure_included.tikz}\n\n\\begin{tikzpicture}\n    \\node (test) at (0,0) {Test3};\n\\end{tikzpicture}\n\n\\tikzsetnextfilename{test_no_match}\n\\begin{tikzpicture}\n    \\node (test) at (0,0) {Test4};\n\\end{tikzpicture}\n\n\\end{document}\n', 'figures/figure_not_included.tex': '\\addplot{figures/data_not_included.txt}\n\\input{figures/figure_not_included_2.tex}\n', 'figures/figure_not_included_2.tex': '', 'figures/figure_included.tikz': '\ufeff\\tikzsetnextfilename{test2}\n\\begin{tikzpicture}\n\\node {root}\nchild {node {left}}\nchild {node {right}\nchild {node {child}}\nchild {node {child}}\n};\n\\end{tikzpicture}\n', 'figures/figure_included.tex': '\\includegraphics{images/im2_included.jpg}\n\\addplot{figures/data_included.txt}\n'} [/STATE]
          tex_contents[tex_file], parameters
      )

    for tex_file in tex_contents: #  [STATE] tex_file = 'main.tex' [/STATE] [STATE] tex_file = 'figures/figure_not_included.tex' [/STATE] [STATE] tex_file = 'figures/figure_not_included_2.tex' [/STATE] [STATE] tex_file = 'figures/figure_included.tikz' [/STATE] [STATE] tex_file = 'figures/figure_included.tex' [/STATE]
      logging.info('Replacing \\includesvg calls in file %s.', tex_file)
      tex_contents[tex_file] = _replace_includesvg(
          tex_contents[tex_file], splits['svg_inkscape']
      )

    for tex_file in tex_contents: #  [STATE] tex_file = 'main.tex' [/STATE] [STATE] tex_file = 'figures/figure_not_included.tex' [/STATE] [STATE] tex_file = 'figures/figure_not_included_2.tex' [/STATE] [STATE] tex_file = 'figures/figure_included.tikz' [/STATE] [STATE] tex_file = 'figures/figure_included.tex' [/STATE]
      logging.info('Replacing Tikz Pictures in file %s.', tex_file)
      content = _replace_tikzpictures( #  [STATE] content = '\\begin{document}\nText\n\nText%\n\n\nThis is a percent \\%.\n\\includegraphics{images/im1_included.png}\n\\includegraphics{images/im3_included.png}\n\\includegraphics{%\n  images/im4_included.png%\n  }\n\\includegraphics[width=.5\\linewidth]{%\n  images/im5_included.jpg}\n\n\\includegraphics{./images/im3_included.png}\n\nThis line should not be separated\n%\nfrom this one.\n\n\n\n\\newif\\ifvar\n\n\\ifvar\n\\fi\n\n\\newcommand{\\red}[1]{{\\color{red} #1}}\nhello test hello\ntest hello\ntest\n\n\n\\input{figures/figure_included.tex}\n\n\\includegraphics{ext_tikz/test1.pdf}\n\n\\input{figures/figure_included.tikz}\n\n\\begin{tikzpicture}\n    \\node (test) at (0,0) {Test3};\n\\end{tikzpicture}\n\n\\tikzsetnextfilename{test_no_match}\n\\begin{tikzpicture}\n    \\node (test) at (0,0) {Test4};\n\\end{tikzpicture}\n\n\\end{document}\n' [/STATE] [STATE] content = '\\addplot{figures/data_not_included.txt}\n\\input{figures/figure_not_included_2.tex}\n' [/STATE] [STATE] content = '' [/STATE] [STATE] content = '\ufeff\\includegraphics{ext_tikz/test2.pdf}\n' [/STATE] [STATE] content = '\\includegraphics{images/im2_included.jpg}\n\\addplot{figures/data_included.txt}\n' [/STATE]
          tex_contents[tex_file], splits['external_tikz_figures']
      )
      # If file ends with '\n' already, the split in last line would add an extra
      # '\n', so we remove it.
      tex_contents[tex_file] = content.split('\n') #  [STATE] tex_contents = {'main.tex': ['\\begin{document}', 'Text', '', 'Text%', '', '', 'This is a percent \\%.', '\\includegraphics{images/im1_included.png}', '\\includegraphics{images/im3_included.png}', '\\includegraphics{%', '  images/im4_included.png%', '  }', '\\includegraphics[width=.5\\linewidth]{%', '  images/im5_included.jpg}', '', '\\includegraphics{./images/im3_included.png}', '', 'This line should not be separated', '%', 'from this one.', '', '', '', '\\newif\\ifvar', '', '\\ifvar', '\\fi', '', '\\newcommand{\\red}[1]{{\\color{red} #1}}', 'hello test hello', 'test hello', 'test', '', '', '\\input{figures/figure_included.tex}', '', '\\includegraphics{ext_tikz/test1.pdf}', '', '\\input{figures/figure_included.tikz}', '', '\\begin{tikzpicture}', '    \\node (test) at (0,0) {Test3};', '\\end{tikzpicture}', '', '\\tikzsetnextfilename{test_no_match}', '\\begin{tikzpicture}', '    \\node (test) at (0,0) {Test4};', '\\end{tikzpicture}', '', '\\end{document}', ''], 'figures/figure_not_included.tex': '\\addplot{figures/data_not_included.txt}\n\\input{figures/figure_not_included_2.tex}\n', 'figures/figure_not_included_2.tex': '', 'figures/figure_included.tikz': '\ufeff\\tikzsetnextfilename{test2}\n\\begin{tikzpicture}\n\\node {root}\nchild {node {left}}\nchild {node {right}\nchild {node {child}}\nchild {node {child}}\n};\n\\end{tikzpicture}\n', 'figures/figure_included.tex': '\\includegraphics{images/im2_included.jpg}\n\\addplot{figures/data_included.txt}\n'} [/STATE] [STATE] tex_contents = {'main.tex': ['\\begin{document}', 'Text', '', 'Text%', '', '', 'This is a percent \\%.', '\\includegraphics{images/im1_included.png}', '\\includegraphics{images/im3_included.png}', '\\includegraphics{%', '  images/im4_included.png%', '  }', '\\includegraphics[width=.5\\linewidth]{%', '  images/im5_included.jpg}', '', '\\includegraphics{./images/im3_included.png}', '', 'This line should not be separated', '%', 'from this one.', '', '', '', '\\newif\\ifvar', '', '\\ifvar', '\\fi', '', '\\newcommand{\\red}[1]{{\\color{red} #1}}', 'hello test hello', 'test hello', 'test', '', '', '\\input{figures/figure_included.tex}', '', '\\includegraphics{ext_tikz/test1.pdf}', '', '\\input{figures/figure_included.tikz}', '', '\\begin{tikzpicture}', '    \\node (test) at (0,0) {Test3};', '\\end{tikzpicture}', '', '\\tikzsetnextfilename{test_no_match}', '\\begin{tikzpicture}', '    \\node (test) at (0,0) {Test4};', '\\end{tikzpicture}', '', '\\end{document}', ''], 'figures/figure_not_included.tex': ['\\addplot{figures/data_not_included.txt}', '\\input{figures/figure_not_included_2.tex}', ''], 'figures/figure_not_included_2.tex': '', 'figures/figure_included.tikz': '\ufeff\\tikzsetnextfilename{test2}\n\\begin{tikzpicture}\n\\node {root}\nchild {node {left}}\nchild {node {right}\nchild {node {child}}\nchild {node {child}}\n};\n\\end{tikzpicture}\n', 'figures/figure_included.tex': '\\includegraphics{images/im2_included.jpg}\n\\addplot{figures/data_included.txt}\n'} [/STATE] [STATE] tex_contents = {'main.tex': ['\\begin{document}', 'Text', '', 'Text%', '', '', 'This is a percent \\%.', '\\includegraphics{images/im1_included.png}', '\\includegraphics{images/im3_included.png}', '\\includegraphics{%', '  images/im4_included.png%', '  }', '\\includegraphics[width=.5\\linewidth]{%', '  images/im5_included.jpg}', '', '\\includegraphics{./images/im3_included.png}', '', 'This line should not be separated', '%', 'from this one.', '', '', '', '\\newif\\ifvar', '', '\\ifvar', '\\fi', '', '\\newcommand{\\red}[1]{{\\color{red} #1}}', 'hello test hello', 'test hello', 'test', '', '', '\\input{figures/figure_included.tex}', '', '\\includegraphics{ext_tikz/test1.pdf}', '', '\\input{figures/figure_included.tikz}', '', '\\begin{tikzpicture}', '    \\node (test) at (0,0) {Test3};', '\\end{tikzpicture}', '', '\\tikzsetnextfilename{test_no_match}', '\\begin{tikzpicture}', '    \\node (test) at (0,0) {Test4};', '\\end{tikzpicture}', '', '\\end{document}', ''], 'figures/figure_not_included.tex': ['\\addplot{figures/data_not_included.txt}', '\\input{figures/figure_not_included_2.tex}', ''], 'figures/figure_not_included_2.tex': [''], 'figures/figure_included.tikz': '\ufeff\\tikzsetnextfilename{test2}\n\\begin{tikzpicture}\n\\node {root}\nchild {node {left}}\nchild {node {right}\nchild {node {child}}\nchild {node {child}}\n};\n\\end{tikzpicture}\n', 'figures/figure_included.tex': '\\includegraphics{images/im2_included.jpg}\n\\addplot{figures/data_included.txt}\n'} [/STATE] [STATE] tex_contents = {'main.tex': ['\\begin{document}', 'Text', '', 'Text%', '', '', 'This is a percent \\%.', '\\includegraphics{images/im1_included.png}', '\\includegraphics{images/im3_included.png}', '\\includegraphics{%', '  images/im4_included.png%', '  }', '\\includegraphics[width=.5\\linewidth]{%', '  images/im5_included.jpg}', '', '\\includegraphics{./images/im3_included.png}', '', 'This line should not be separated', '%', 'from this one.', '', '', '', '\\newif\\ifvar', '', '\\ifvar', '\\fi', '', '\\newcommand{\\red}[1]{{\\color{red} #1}}', 'hello test hello', 'test hello', 'test', '', '', '\\input{figures/figure_included.tex}', '', '\\includegraphics{ext_tikz/test1.pdf}', '', '\\input{figures/figure_included.tikz}', '', '\\begin{tikzpicture}', '    \\node (test) at (0,0) {Test3};', '\\end{tikzpicture}', '', '\\tikzsetnextfilename{test_no_match}', '\\begin{tikzpicture}', '    \\node (test) at (0,0) {Test4};', '\\end{tikzpicture}', '', '\\end{document}', ''], 'figures/figure_not_included.tex': ['\\addplot{figures/data_not_included.txt}', '\\input{figures/figure_not_included_2.tex}', ''], 'figures/figure_not_included_2.tex': [''], 'figures/figure_included.tikz': ['\ufeff\\includegraphics{ext_tikz/test2.pdf}', ''], 'figures/figure_included.tex': '\\includegraphics{images/im2_included.jpg}\n\\addplot{figures/data_included.txt}\n'} [/STATE] [STATE] tex_contents = {'main.tex': ['\\begin{document}', 'Text', '', 'Text%', '', '', 'This is a percent \\%.', '\\includegraphics{images/im1_included.png}', '\\includegraphics{images/im3_included.png}', '\\includegraphics{%', '  images/im4_included.png%', '  }', '\\includegraphics[width=.5\\linewidth]{%', '  images/im5_included.jpg}', '', '\\includegraphics{./images/im3_included.png}', '', 'This line should not be separated', '%', 'from this one.', '', '', '', '\\newif\\ifvar', '', '\\ifvar', '\\fi', '', '\\newcommand{\\red}[1]{{\\color{red} #1}}', 'hello test hello', 'test hello', 'test', '', '', '\\input{figures/figure_included.tex}', '', '\\includegraphics{ext_tikz/test1.pdf}', '', '\\input{figures/figure_included.tikz}', '', '\\begin{tikzpicture}', '    \\node (test) at (0,0) {Test3};', '\\end{tikzpicture}', '', '\\tikzsetnextfilename{test_no_match}', '\\begin{tikzpicture}', '    \\node (test) at (0,0) {Test4};', '\\end{tikzpicture}', '', '\\end{document}', ''], 'figures/figure_not_included.tex': ['\\addplot{figures/data_not_included.txt}', '\\input{figures/figure_not_included_2.tex}', ''], 'figures/figure_not_included_2.tex': [''], 'figures/figure_included.tikz': ['\ufeff\\includegraphics{ext_tikz/test2.pdf}', ''], 'figures/figure_included.tex': ['\\includegraphics{images/im2_included.jpg}', '\\addplot{figures/data_included.txt}', '']} [/STATE]

    _keep_only_referenced_tex(tex_contents, splits) # [STATE] splits = {'all': ['main.bib', 'main.bbl', 'main.tex', 'main.aux', 'ext_tikz/test2.pdf', 'ext_tikz/test1.pdf', 'ext_tikz/figure_not_included.pdf', 'figures/data_not_included.txt', 'figures/figure_not_included.tex', 'figures/figure_not_included_2.tex', 'figures/figure_included.tikz', 'figures/figure_included.tex', 'figures/data_included.txt', 'not_included/figures/data_included.txt', 'images/im4_included.png', 'images/im1.png', 'images/im4_not_included.png', 'images/im3_included.png', 'images/im2_included.jpg', 'images/im5_not_included.jpg', 'images/im5_included.jpg', 'images/im1_included.png', 'images/im_not_included.png', 'images/include/images/im3_included.png'], 'in_root': ['main.bib', 'main.bbl', 'main.tex', 'main.aux'], 'not_in_root': ['ext_tikz/test2.pdf', 'ext_tikz/test1.pdf', 'ext_tikz/figure_not_included.pdf', 'figures/data_not_included.txt', 'figures/figure_not_included.tex', 'figures/figure_not_included_2.tex', 'figures/figure_included.tikz', 'figures/figure_included.tex', 'figures/data_included.txt', 'not_included/figures/data_included.txt', 'images/im4_included.png', 'images/im1.png', 'images/im4_not_included.png', 'images/im3_included.png', 'images/im2_included.jpg', 'images/im5_not_included.jpg', 'images/im5_included.jpg', 'images/im1_included.png', 'images/im_not_included.png', 'images/include/images/im3_included.png'], 'to_copy_in_root': ['main.bbl', 'main.tex'], 'to_copy_not_in_root': ['figures/data_not_included.txt', 'figures/figure_not_included.tex', 'figures/figure_not_included_2.tex', 'figures/figure_included.tikz', 'figures/figure_included.tex', 'figures/data_included.txt', 'not_included/figures/data_included.txt'], 'figures': ['ext_tikz/test2.pdf', 'ext_tikz/test1.pdf', 'ext_tikz/figure_not_included.pdf', 'images/im4_included.png', 'images/im1.png', 'images/im4_not_included.png', 'images/im3_included.png', 'images/im2_included.jpg', 'images/im5_not_included.jpg', 'images/im5_included.jpg', 'images/im1_included.png', 'images/im_not_included.png', 'images/include/images/im3_included.png'], 'tex_in_root': ['main.tex'], 'tex_not_in_root': ['figures/figure_not_included.tex', 'figures/figure_not_included_2.tex', 'figures/figure_included.tikz', 'figures/figure_included.tex'], 'non_tex_in_root': ['main.bbl'], 'non_tex_not_in_root': ['figures/data_not_included.txt', 'figures/data_included.txt', 'not_included/figures/data_included.txt'], 'external_tikz_figures': ['ext_tikz/test2.pdf', 'ext_tikz/test1.pdf', 'ext_tikz/figure_not_included.pdf'], 'svg_inkscape': [], 'tex_to_copy': ['figures/figure_included.tex', 'figures/figure_included.tikz', 'main.tex']} [/STATE]
    _add_root_tex_files(splits)

    for tex_file in splits['tex_to_copy']: #  [STATE] tex_file = 'figures/figure_included.tikz' [/STATE] [STATE] tex_file = 'main.tex' [/STATE]
      logging.info('Replacing patterns in file %s.', tex_file)
      content = '\n'.join(tex_contents[tex_file]) #  [STATE] content = '\ufeff\\includegraphics{ext_tikz/test2.pdf}\n' [/STATE] [STATE] content = '\\begin{document}\nText\n\nText%\n\n\nThis is a percent \\%.\n\\includegraphics{images/im1_included.png}\n\\includegraphics{images/im3_included.png}\n\\includegraphics{%\n  images/im4_included.png%\n  }\n\\includegraphics[width=.5\\linewidth]{%\n  images/im5_included.jpg}\n\n\\includegraphics{./images/im3_included.png}\n\nThis line should not be separated\n%\nfrom this one.\n\n\n\n\\newif\\ifvar\n\n\\ifvar\n\\fi\n\n\\newcommand{\\red}[1]{{\\color{red} #1}}\nhello test hello\ntest hello\ntest\n\n\n\\input{figures/figure_included.tex}\n\n\\includegraphics{ext_tikz/test1.pdf}\n\n\\input{figures/figure_included.tikz}\n\n\\begin{tikzpicture}\n    \\node (test) at (0,0) {Test3};\n\\end{tikzpicture}\n\n\\tikzsetnextfilename{test_no_match}\n\\begin{tikzpicture}\n    \\node (test) at (0,0) {Test4};\n\\end{tikzpicture}\n\n\\end{document}\n' [/STATE]
      content = _find_and_replace_patterns(
          content, parameters.get('patterns_and_insertions', list())
      )
      tex_contents[tex_file] = content #  [STATE] tex_contents = {'main.tex': ['\\begin{document}', 'Text', '', 'Text%', '', '', 'This is a percent \\%.', '\\includegraphics{images/im1_included.png}', '\\includegraphics{images/im3_included.png}', '\\includegraphics{%', '  images/im4_included.png%', '  }', '\\includegraphics[width=.5\\linewidth]{%', '  images/im5_included.jpg}', '', '\\includegraphics{./images/im3_included.png}', '', 'This line should not be separated', '%', 'from this one.', '', '', '', '\\newif\\ifvar', '', '\\ifvar', '\\fi', '', '\\newcommand{\\red}[1]{{\\color{red} #1}}', 'hello test hello', 'test hello', 'test', '', '', '\\input{figures/figure_included.tex}', '', '\\includegraphics{ext_tikz/test1.pdf}', '', '\\input{figures/figure_included.tikz}', '', '\\begin{tikzpicture}', '    \\node (test) at (0,0) {Test3};', '\\end{tikzpicture}', '', '\\tikzsetnextfilename{test_no_match}', '\\begin{tikzpicture}', '    \\node (test) at (0,0) {Test4};', '\\end{tikzpicture}', '', '\\end{document}', ''], 'figures/figure_not_included.tex': ['\\addplot{figures/data_not_included.txt}', '\\input{figures/figure_not_included_2.tex}', ''], 'figures/figure_not_included_2.tex': [''], 'figures/figure_included.tikz': ['\ufeff\\includegraphics{ext_tikz/test2.pdf}', ''], 'figures/figure_included.tex': '\\includegraphics{images/im2_included.jpg}\n\\addplot{figures/data_included.txt}\n'} [/STATE] [STATE] tex_contents = {'main.tex': ['\\begin{document}', 'Text', '', 'Text%', '', '', 'This is a percent \\%.', '\\includegraphics{images/im1_included.png}', '\\includegraphics{images/im3_included.png}', '\\includegraphics{%', '  images/im4_included.png%', '  }', '\\includegraphics[width=.5\\linewidth]{%', '  images/im5_included.jpg}', '', '\\includegraphics{./images/im3_included.png}', '', 'This line should not be separated', '%', 'from this one.', '', '', '', '\\newif\\ifvar', '', '\\ifvar', '\\fi', '', '\\newcommand{\\red}[1]{{\\color{red} #1}}', 'hello test hello', 'test hello', 'test', '', '', '\\input{figures/figure_included.tex}', '', '\\includegraphics{ext_tikz/test1.pdf}', '', '\\input{figures/figure_included.tikz}', '', '\\begin{tikzpicture}', '    \\node (test) at (0,0) {Test3};', '\\end{tikzpicture}', '', '\\tikzsetnextfilename{test_no_match}', '\\begin{tikzpicture}', '    \\node (test) at (0,0) {Test4};', '\\end{tikzpicture}', '', '\\end{document}', ''], 'figures/figure_not_included.tex': ['\\addplot{figures/data_not_included.txt}', '\\input{figures/figure_not_included_2.tex}', ''], 'figures/figure_not_included_2.tex': [''], 'figures/figure_included.tikz': '\ufeff\\includegraphics{ext_tikz/test2.pdf}\n', 'figures/figure_included.tex': '\\includegraphics{images/im2_included.jpg}\n\\addplot{figures/data_included.txt}\n'} [/STATE] [STATE] tex_contents = {'main.tex': '\\begin{document}\nText\n\nText%\n\n\nThis is a percent \\%.\n\\includegraphics{images/im1_included.png}\n\\includegraphics{images/im3_included.png}\n\\includegraphics{%\n  images/im4_included.png%\n  }\n\\includegraphics[width=.5\\linewidth]{%\n  images/im5_included.jpg}\n\n\\includegraphics{./images/im3_included.png}\n\nThis line should not be separated\n%\nfrom this one.\n\n\n\n\\newif\\ifvar\n\n\\ifvar\n\\fi\n\n\\newcommand{\\red}[1]{{\\color{red} #1}}\nhello test hello\ntest hello\ntest\n\n\n\\input{figures/figure_included.tex}\n\n\\includegraphics{ext_tikz/test1.pdf}\n\n\\input{figures/figure_included.tikz}\n\n\\begin{tikzpicture}\n    \\node (test) at (0,0) {Test3};\n\\end{tikzpicture}\n\n\\tikzsetnextfilename{test_no_match}\n\\begin{tikzpicture}\n    \\node (test) at (0,0) {Test4};\n\\end{tikzpicture}\n\n\\end{document}\n', 'figures/figure_not_included.tex': ['\\addplot{figures/data_not_included.txt}', '\\input{figures/figure_not_included_2.tex}', ''], 'figures/figure_not_included_2.tex': [''], 'figures/figure_included.tikz': '\ufeff\\includegraphics{ext_tikz/test2.pdf}\n', 'figures/figure_included.tex': '\\includegraphics{images/im2_included.jpg}\n\\addplot{figures/data_included.txt}\n'} [/STATE]
      new_path = os.path.join(parameters['output_folder'], tex_file) #  [STATE] new_path = '/local/rcs/XXX/code/pytrace-collector/logs/self_collected/tried/google-research+arxiv-latex-cleaner/google-research+arxiv-latex-cleaner/tex_arXiv/figures/figure_included.tex' [/STATE] [STATE] new_path = '/local/rcs/XXX/code/pytrace-collector/logs/self_collected/tried/google-research+arxiv-latex-cleaner/google-research+arxiv-latex-cleaner/tex_arXiv/figures/figure_included.tikz' [/STATE] [STATE] new_path = '/local/rcs/XXX/code/pytrace-collector/logs/self_collected/tried/google-research+arxiv-latex-cleaner/google-research+arxiv-latex-cleaner/tex_arXiv/main.tex' [/STATE]
      logging.info('Writing modified contents to %s.', new_path)
      _write_file_content(
          content,
          new_path,
      )

    full_content = '\n'.join( # [STATE] full_content = '\\includegraphics{images/im2_included.jpg}\n\\addplot{figures/data_included.txt}\n\n\ufeff\\includegraphics{ext_tikz/test2.pdf}\n\n\\begin{document}\nText\n\nText%\n\n\nThis is a percent \\%.\n\\includegraphics{images/im1_included.png}\n\\includegraphics{images/im3_included.png}\n\\includegraphics{%\n  images/im4_included.png%\n  }\n\\includegraphics[width=.5\\linewidth]{%\n  images/im5_included.jpg}\n\n\\includegraphics{./images/im3_included.png}\n\nThis line should not be separated\n%\nfrom this one.\n\n\n\n\\newif\\ifvar\n\n\\ifvar\n\\fi\n\n\\newcommand{\\red}[1]{{\\color{red} #1}}\nhello test hello\ntest hello\ntest\n\n\n\\input{figures/figure_included.tex}\n\n\\includegraphics{ext_tikz/test1.pdf}\n\n\\input{figures/figure_included.tikz}\n\n\\begin{tikzpicture}\n    \\node (test) at (0,0) {Test3};\n\\end{tikzpicture}\n\n\\tikzsetnextfilename{test_no_match}\n\\begin{tikzpicture}\n    \\node (test) at (0,0) {Test4};\n\\end{tikzpicture}\n\n\\end{document}\n' [/STATE]
        ''.join(tex_contents[fn]) for fn in splits['tex_to_copy']
    )
    _copy_only_referenced_non_tex_not_in_root(parameters, full_content, splits)
    for non_tex_file in splits['non_tex_in_root']: #  [STATE] non_tex_file = 'main.bbl' [/STATE]
      logging.info('Copying non-tex file %s.', non_tex_file)
      _copy_file(non_tex_file, parameters)

    _resize_and_copy_figures_if_referenced(parameters, full_content, splits)
    logging.info('Outputs written to %s', parameters['output_folder'])

run_arxiv_cleaner({'input_folder': 'tex', 'images_allowlist': {'images/im2_included.jpg': 200, 'images/im3_included.png': 400}, 'resize_images': True, 'im_size': 100, 'compress_pdf': False, 'pdf_im_resolution': 500, 'commands_to_delete': ['mytodo'], 'commands_only_to_delete': ['red'], 'environments_to_delete': ['mynote'], 'use_external_tikz': 'ext_tikz', 'keep_bib': False})

1: def run_arxiv_cleaner(parameters):
2:   """Core of the code, runs the actual arXiv cleaner."""
3:
4:   files_to_delete = [
5:       r'\.aux$',
6:       r'\.sh$',
7:       r'\.blg$',
8:       r'\.brf$',
9:       r'\.log$',
10:       r'\.out$',
11:       r'\.ps$',
12:       r'\.dvi$',
13:       r'\.synctex.gz$',
14:       '~$',
15:       r'\.backup$',
16:       r'\.gitignore$',
17:       r'\.DS_Store$',
18:       r'\.svg$',
19:       r'^\.idea',
20:       r'\.dpth$',
21:       r'\.md5$',
22:       r'\.dep$',
23:       r'\.auxlock$',
24:       r'\.fls$',
25:       r'\.fdb_latexmk$',
26:   ]
27:
28:   if not parameters['keep_bib']:
29:     files_to_delete.append(r'\.bib$')
30:
31:   parameters.update({
32:       'to_delete': files_to_delete,
33:       'figures_to_copy_if_referenced': [
34:           r'\.png$',
35:           r'\.jpg$',
36:           r'\.jpeg$',
37:           r'\.pdf$',
38:       ],
39:   })
40:
41:   logging.info('Collecting file structure.')
42:   parameters['output_folder'] = _create_out_folder(parameters['input_folder'])
43:
44:   from_zip = parameters['input_folder'].endswith('.zip')
45:   tempdir_context = (
46:       tempfile.TemporaryDirectory() if from_zip else contextlib.suppress()
47:   )
48:
49:   with tempdir_context as tempdir:
50:
51:     if from_zip:
52:       logging.info('Unzipping input folder.')
53:       shutil.unpack_archive(parameters['input_folder'], tempdir)
54:       parameters['input_folder'] = tempdir
55:
56:     splits = _split_all_files(parameters)
57:
58:     logging.info('Reading all tex files')
59:     tex_contents = _read_all_tex_contents(
60:         splits['tex_in_root'] + splits['tex_not_in_root'], parameters
61:     )
62:
63:     for tex_file in tex_contents:
64:       logging.info('Removing comments in file %s.', tex_file)
65:       tex_contents[tex_file] = _remove_comments_and_commands_to_delete(
66:           tex_contents[tex_file], parameters
67:       )
68:
69:     for tex_file in tex_contents:
70:       logging.info('Replacing \\includesvg calls in file %s.', tex_file)
71:       tex_contents[tex_file] = _replace_includesvg(
72:           tex_contents[tex_file], splits['svg_inkscape']
73:       )
74:
75:     for tex_file in tex_contents:
76:       logging.info('Replacing Tikz Pictures in file %s.', tex_file)
77:       content = _replace_tikzpictures(
78:           tex_contents[tex_file], splits['external_tikz_figures']
79:       )
80:       # If file ends with '\n' already, the split in last line would add an extra
81:       # '\n', so we remove it.
82:       tex_contents[tex_file] = content.split('\n')
83:
84:     _keep_only_referenced_tex(tex_contents, splits)
85:     _add_root_tex_files(splits)
86:
87:     for tex_file in splits['tex_to_copy']:
88:       logging.info('Replacing patterns in file %s.', tex_file)
89:       content = '\n'.join(tex_contents[tex_file])
90:       content = _find_and_replace_patterns(
91:           content, parameters.get('patterns_and_insertions', list())
92:       )
93:       tex_contents[tex_file] = content
94:       new_path = os.path.join(parameters['output_folder'], tex_file)
95:       logging.info('Writing modified contents to %s.', new_path)
96:       _write_file_content(
97:           content,
98:           new_path,
99:       )
100:
101:     full_content = '\n'.join(
102:         ''.join(tex_contents[fn]) for fn in splits['tex_to_copy']
103:     )
104:     _copy_only_referenced_non_tex_not_in_root(parameters, full_content, splits)
105:     for non_tex_file in splits['non_tex_in_root']:
106:       logging.info('Copying non-tex file %s.', non_tex_file)
107:       _copy_file(non_tex_file, parameters)
108:
109:     _resize_and_copy_figures_if_referenced(parameters, full_content, splits)
110:     logging.info('Outputs written to %s', parameters['output_folder'])
111:
112: run_arxiv_cleaner({'input_folder': 'tex', 'images_allowlist': {'images/im2_included.jpg': 200, 'images/im3_included.png': 400}, 'resize_images': True, 'im_size': 100, 'compress_pdf': False, 'pdf_im_resolution': 500, 'commands_to_delete': ['mytodo'], 'commands_only_to_delete': ['red'], 'environments_to_delete': ['mynote'], 'use_external_tikz': 'ext_tikz', 'keep_bib': False})

Question: What is the value of 'tex_file' in line 75 after executing 'run_arxiv_cleaner({'input_folder': 'tex', 'images_allowlist': {'images/im2_included.jpg': 200, 'images/im3_included.png': 400}, 'resize_images': True, 'im_size': 100, 'compress_pdf': False, 'pdf_im_resolution': 500, 'commands_to_delete': ['mytodo'], 'commands_only_to_delete': ['red'], 'environments_to_delete': ['mynote'], 'use_external_tikz': 'ext_tikz', 'keep_bib': False})'?

Answer: 'figures/figure_included.tikz'


def _remove_comments_and_commands_to_delete(content, parameters):
  """Erases all LaTeX comments in the content, and writes it."""
  content = [_remove_comments_inline(line) for line in content] # [STATE] content = ['\\begin{document}\n', 'Text\n', '', '\n', 'Text%\n', '\\begin{comment}\n', 'This is an environment comment.\n', '\\end{comment}\n', '\n', 'This is a percent \\%.\n', '', '\\includegraphics{images/im1_included.png}\n', '', '\\includegraphics{images/im3_included.png}\n', '\\includegraphics{%\n', '  images/im4_included.png%\n', '  }\n', '\\includegraphics[width=.5\\linewidth]{%\n', '  images/im5_included.jpg}\n', '', '', '', '', '', '\n', '', '\\includegraphics{./images/im3_included.png}\n', '\n', 'This line should\\mytodo{Do this later} not be separated\n', '\\mytodo{This is a todo command with a nested \\textit{command}.\n', 'Please remember that up to \\texttt{2 levels} of \\textit{nesting} are supported.}\n', 'from this one.\n', '\n', '\\begin{mynote}\n', '  This is a custom environment that could be excluded.\n', '\\end{mynote}\n', '\n', '\\newif\\ifvar\n', '\n', '\\ifvar\n', '\\if    false\n', '\\if false\n', '\\if 0\n', '\\iffalse\n', '\\ifvar\n', 'Text\n', '\\fi\n', '\\fi\n', '\\fi\n', '\\fi\n', '\\fi\n', '\\fi\n', '\n', '\\newcommand{\\red}[1]{{\\color{red} #1}}\n', 'hello test \\red{hello\n', 'test \\red{hello}}\n', 'test\n', '\n', '', '\n', '\\input{figures/figure_included.tex}\n', '', '\n', '', '', '\\tikzsetnextfilename{test1}\n', '\\begin{tikzpicture}\n', '    \\node (test) at (0,0) {Test1};\n', '\\end{tikzpicture}\n', '\n', '', '\\input{figures/figure_included.tikz}\n', '\n', '', '\\begin{tikzpicture}\n', '    \\node (test) at (0,0) {Test3};\n', '\\end{tikzpicture}\n', '\n', '\\tikzsetnextfilename{test_no_match}\n', '\\begin{tikzpicture}\n', '    \\node (test) at (0,0) {Test4};\n', '\\end{tikzpicture}\n', '\n', '\\end{document}\n'] [/STATE]
  content = _remove_environment(''.join(content), 'comment') # [STATE] content = '\\begin{document}\nText\n\nText%\n\n\nThis is a percent \\%.\n\\includegraphics{images/im1_included.png}\n\\includegraphics{images/im3_included.png}\n\\includegraphics{%\n  images/im4_included.png%\n  }\n\\includegraphics[width=.5\\linewidth]{%\n  images/im5_included.jpg}\n\n\\includegraphics{./images/im3_included.png}\n\nThis line should\\mytodo{Do this later} not be separated\n\\mytodo{This is a todo command with a nested \\textit{command}.\nPlease remember that up to \\texttt{2 levels} of \\textit{nesting} are supported.}\nfrom this one.\n\n\\begin{mynote}\n  This is a custom environment that could be excluded.\n\\end{mynote}\n\n\\newif\\ifvar\n\n\\ifvar\n\\if    false\n\\if false\n\\if 0\n\\iffalse\n\\ifvar\nText\n\\fi\n\\fi\n\\fi\n\\fi\n\\fi\n\\fi\n\n\\newcommand{\\red}[1]{{\\color{red} #1}}\nhello test \\red{hello\ntest \\red{hello}}\ntest\n\n\n\\input{figures/figure_included.tex}\n\n\\tikzsetnextfilename{test1}\n\\begin{tikzpicture}\n    \\node (test) at (0,0) {Test1};\n\\end{tikzpicture}\n\n\\input{figures/figure_included.tikz}\n\n\\begin{tikzpicture}\n    \\node (test) at (0,0) {Test3};\n\\end{tikzpicture}\n\n\\tikzsetnextfilename{test_no_match}\n\\begin{tikzpicture}\n    \\node (test) at (0,0) {Test4};\n\\end{tikzpicture}\n\n\\end{document}\n' [/STATE]
  content = _remove_iffalse_block(content) # [STATE] content = '\\begin{document}\nText\n\nText%\n\n\nThis is a percent \\%.\n\\includegraphics{images/im1_included.png}\n\\includegraphics{images/im3_included.png}\n\\includegraphics{%\n  images/im4_included.png%\n  }\n\\includegraphics[width=.5\\linewidth]{%\n  images/im5_included.jpg}\n\n\\includegraphics{./images/im3_included.png}\n\nThis line should\\mytodo{Do this later} not be separated\n\\mytodo{This is a todo command with a nested \\textit{command}.\nPlease remember that up to \\texttt{2 levels} of \\textit{nesting} are supported.}\nfrom this one.\n\n\\begin{mynote}\n  This is a custom environment that could be excluded.\n\\end{mynote}\n\n\\newif\\ifvar\n\n\\ifvar\n\\fi\n\n\\newcommand{\\red}[1]{{\\color{red} #1}}\nhello test \\red{hello\ntest \\red{hello}}\ntest\n\n\n\\input{figures/figure_included.tex}\n\n\\tikzsetnextfilename{test1}\n\\begin{tikzpicture}\n    \\node (test) at (0,0) {Test1};\n\\end{tikzpicture}\n\n\\input{figures/figure_included.tikz}\n\n\\begin{tikzpicture}\n    \\node (test) at (0,0) {Test3};\n\\end{tikzpicture}\n\n\\tikzsetnextfilename{test_no_match}\n\\begin{tikzpicture}\n    \\node (test) at (0,0) {Test4};\n\\end{tikzpicture}\n\n\\end{document}\n' [/STATE]
  for environment in parameters.get('environments_to_delete', []): #  [STATE] environment = 'mynote' [/STATE]
    content = _remove_environment(content, environment) # [STATE] content = '\\begin{document}\nText\n\nText%\n\n\nThis is a percent \\%.\n\\includegraphics{images/im1_included.png}\n\\includegraphics{images/im3_included.png}\n\\includegraphics{%\n  images/im4_included.png%\n  }\n\\includegraphics[width=.5\\linewidth]{%\n  images/im5_included.jpg}\n\n\\includegraphics{./images/im3_included.png}\n\nThis line should\\mytodo{Do this later} not be separated\n\\mytodo{This is a todo command with a nested \\textit{command}.\nPlease remember that up to \\texttt{2 levels} of \\textit{nesting} are supported.}\nfrom this one.\n\n\n\n\\newif\\ifvar\n\n\\ifvar\n\\fi\n\n\\newcommand{\\red}[1]{{\\color{red} #1}}\nhello test \\red{hello\ntest \\red{hello}}\ntest\n\n\n\\input{figures/figure_included.tex}\n\n\\tikzsetnextfilename{test1}\n\\begin{tikzpicture}\n    \\node (test) at (0,0) {Test1};\n\\end{tikzpicture}\n\n\\input{figures/figure_included.tikz}\n\n\\begin{tikzpicture}\n    \\node (test) at (0,0) {Test3};\n\\end{tikzpicture}\n\n\\tikzsetnextfilename{test_no_match}\n\\begin{tikzpicture}\n    \\node (test) at (0,0) {Test4};\n\\end{tikzpicture}\n\n\\end{document}\n' [/STATE]
  for command in parameters.get('commands_only_to_delete', []): #  [STATE] command = 'red' [/STATE]
    content = _remove_command(content, command, True) # [STATE] content = '\\begin{document}\nText\n\nText%\n\n\nThis is a percent \\%.\n\\includegraphics{images/im1_included.png}\n\\includegraphics{images/im3_included.png}\n\\includegraphics{%\n  images/im4_included.png%\n  }\n\\includegraphics[width=.5\\linewidth]{%\n  images/im5_included.jpg}\n\n\\includegraphics{./images/im3_included.png}\n\nThis line should\\mytodo{Do this later} not be separated\n\\mytodo{This is a todo command with a nested \\textit{command}.\nPlease remember that up to \\texttt{2 levels} of \\textit{nesting} are supported.}\nfrom this one.\n\n\n\n\\newif\\ifvar\n\n\\ifvar\n\\fi\n\n\\newcommand{\\red}[1]{{\\color{red} #1}}\nhello test hello\ntest hello\ntest\n\n\n\\input{figures/figure_included.tex}\n\n\\tikzsetnextfilename{test1}\n\\begin{tikzpicture}\n    \\node (test) at (0,0) {Test1};\n\\end{tikzpicture}\n\n\\input{figures/figure_included.tikz}\n\n\\begin{tikzpicture}\n    \\node (test) at (0,0) {Test3};\n\\end{tikzpicture}\n\n\\tikzsetnextfilename{test_no_match}\n\\begin{tikzpicture}\n    \\node (test) at (0,0) {Test4};\n\\end{tikzpicture}\n\n\\end{document}\n' [/STATE]
  for command in parameters['commands_to_delete']: #  [STATE] command = 'mytodo' [/STATE]
    content = _remove_command(content, command, False) # [STATE] content = '\\begin{document}\nText\n\nText%\n\n\nThis is a percent \\%.\n\\includegraphics{images/im1_included.png}\n\\includegraphics{images/im3_included.png}\n\\includegraphics{%\n  images/im4_included.png%\n  }\n\\includegraphics[width=.5\\linewidth]{%\n  images/im5_included.jpg}\n\n\\includegraphics{./images/im3_included.png}\n\nThis line should not be separated\n%\nfrom this one.\n\n\n\n\\newif\\ifvar\n\n\\ifvar\n\\fi\n\n\\newcommand{\\red}[1]{{\\color{red} #1}}\nhello test hello\ntest hello\ntest\n\n\n\\input{figures/figure_included.tex}\n\n\\tikzsetnextfilename{test1}\n\\begin{tikzpicture}\n    \\node (test) at (0,0) {Test1};\n\\end{tikzpicture}\n\n\\input{figures/figure_included.tikz}\n\n\\begin{tikzpicture}\n    \\node (test) at (0,0) {Test3};\n\\end{tikzpicture}\n\n\\tikzsetnextfilename{test_no_match}\n\\begin{tikzpicture}\n    \\node (test) at (0,0) {Test4};\n\\end{tikzpicture}\n\n\\end{document}\n' [/STATE]
  return content

_remove_comments_and_commands_to_delete(['\\begin{document}\n', 'Text\n', '% Whole line comment\n', '\n', 'Text% Inline comment\n', '\\begin{comment}\n', 'This is an environment comment.\n', '\\end{comment}\n', '\n', 'This is a percent \\%.\n', '% Whole line comment without newline\n', '\\includegraphics{images/im1_included.png}\n', '%\\includegraphics{images/im_not_included}\n', '\\includegraphics{images/im3_included.png}\n', '\\includegraphics{%\n', '  images/im4_included.png%\n', '  }\n', '\\includegraphics[width=.5\\linewidth]{%\n', '  images/im5_included.jpg}\n', '%\\includegraphics{%\n', '%  images/im4_not_included.png\n', '%  }\n', '%\\includegraphics[width=.5\\linewidth]{%\n', '%  images/im5_not_included.jpg}\n', '\n', '% test whatever the path satrting with dot works when include graphics\n', '\\includegraphics{./images/im3_included.png}\n', '\n', 'This line should\\mytodo{Do this later} not be separated\n', '\\mytodo{This is a todo command with a nested \\textit{command}.\n', 'Please remember that up to \\texttt{2 levels} of \\textit{nesting} are supported.}\n', 'from this one.\n', '\n', '\\begin{mynote}\n', '  This is a custom environment that could be excluded.\n', '\\end{mynote}\n', '\n', '\\newif\\ifvar\n', '\n', '\\ifvar\n', '\\if    false\n', '\\if false\n', '\\if 0\n', '\\iffalse\n', '\\ifvar\n', 'Text\n', '\\fi\n', '\\fi\n', '\\fi\n', '\\fi\n', '\\fi\n', '\\fi\n', '\n', '\\newcommand{\\red}[1]{{\\color{red} #1}}\n', 'hello test \\red{hello\n', 'test \\red{hello}}\n', 'test\n', '\n', '% content after this line should not be cleaned if \\end{document} is in a comment\n', '\n', '\\input{figures/figure_included.tex}\n', '% \\input{figures/figure_not_included.tex}\n', '\n', '% Test for tikzpicture feature\n', '% should be replaced\n', '\\tikzsetnextfilename{test1}\n', '\\begin{tikzpicture}\n', '    \\node (test) at (0,0) {Test1};\n', '\\end{tikzpicture}\n', '\n', '% should be replaced in included file\n', '\\input{figures/figure_included.tikz}\n', '\n', '% should not be be replaced - no preceding tikzsetnextfilename command\n', '\\begin{tikzpicture}\n', '    \\node (test) at (0,0) {Test3};\n', '\\end{tikzpicture}\n', '\n', '\\tikzsetnextfilename{test_no_match}\n', '\\begin{tikzpicture}\n', '    \\node (test) at (0,0) {Test4};\n', '\\end{tikzpicture}\n', '\n', '\\end{document}\n'], {'input_folder': 'tex', 'images_allowlist': {'images/im2_included.jpg': 200, 'images/im3_included.png': 400}, 'resize_images': True, 'im_size': 100, 'compress_pdf': False, 'pdf_im_resolution': 500, 'commands_to_delete': ['mytodo'], 'commands_only_to_delete': ['red'], 'environments_to_delete': ['mynote'], 'use_external_tikz': 'ext_tikz', 'keep_bib': False, 'to_delete': ['\\.aux$', '\\.sh$', '\\.blg$', '\\.brf$', '\\.log$', '\\.out$', '\\.ps$', '\\.dvi$', '\\.synctex.gz$', '~$', '\\.backup$', '\\.gitignore$', '\\.DS_Store$', '\\.svg$', '^\\.idea', '\\.dpth$', '\\.md5$', '\\.dep$', '\\.auxlock$', '\\.fls$', '\\.fdb_latexmk$', '\\.bib$'], 'figures_to_copy_if_referenced': ['\\.png$', '\\.jpg$', '\\.jpeg$', '\\.pdf$'], 'output_folder': '/local/rcs/XXX/code/pytrace-collector/logs/self_collected/tried/google-research+arxiv-latex-cleaner/google-research+arxiv-latex-cleaner/tex_arXiv'})

1: def _remove_comments_and_commands_to_delete(content, parameters):
2:   """Erases all LaTeX comments in the content, and writes it."""
3:   content = [_remove_comments_inline(line) for line in content]
4:   content = _remove_environment(''.join(content), 'comment')
5:   content = _remove_iffalse_block(content)
6:   for environment in parameters.get('environments_to_delete', []):
7:     content = _remove_environment(content, environment)
8:   for command in parameters.get('commands_only_to_delete', []):
9:     content = _remove_command(content, command, True)
10:   for command in parameters['commands_to_delete']:
11:     content = _remove_command(content, command, False)
12:   return content
13:
14: _remove_comments_and_commands_to_delete(['\\begin{document}\n', 'Text\n', '% Whole line comment\n', '\n', 'Text% Inline comment\n', '\\begin{comment}\n', 'This is an environment comment.\n', '\\end{comment}\n', '\n', 'This is a percent \\%.\n', '% Whole line comment without newline\n', '\\includegraphics{images/im1_included.png}\n', '%\\includegraphics{images/im_not_included}\n', '\\includegraphics{images/im3_included.png}\n', '\\includegraphics{%\n', '  images/im4_included.png%\n', '  }\n', '\\includegraphics[width=.5\\linewidth]{%\n', '  images/im5_included.jpg}\n', '%\\includegraphics{%\n', '%  images/im4_not_included.png\n', '%  }\n', '%\\includegraphics[width=.5\\linewidth]{%\n', '%  images/im5_not_included.jpg}\n', '\n', '% test whatever the path satrting with dot works when include graphics\n', '\\includegraphics{./images/im3_included.png}\n', '\n', 'This line should\\mytodo{Do this later} not be separated\n', '\\mytodo{This is a todo command with a nested \\textit{command}.\n', 'Please remember that up to \\texttt{2 levels} of \\textit{nesting} are supported.}\n', 'from this one.\n', '\n', '\\begin{mynote}\n', '  This is a custom environment that could be excluded.\n', '\\end{mynote}\n', '\n', '\\newif\\ifvar\n', '\n', '\\ifvar\n', '\\if    false\n', '\\if false\n', '\\if 0\n', '\\iffalse\n', '\\ifvar\n', 'Text\n', '\\fi\n', '\\fi\n', '\\fi\n', '\\fi\n', '\\fi\n', '\\fi\n', '\n', '\\newcommand{\\red}[1]{{\\color{red} #1}}\n', 'hello test \\red{hello\n', 'test \\red{hello}}\n', 'test\n', '\n', '% content after this line should not be cleaned if \\end{document} is in a comment\n', '\n', '\\input{figures/figure_included.tex}\n', '% \\input{figures/figure_not_included.tex}\n', '\n', '% Test for tikzpicture feature\n', '% should be replaced\n', '\\tikzsetnextfilename{test1}\n', '\\begin{tikzpicture}\n', '    \\node (test) at (0,0) {Test1};\n', '\\end{tikzpicture}\n', '\n', '% should be replaced in included file\n', '\\input{figures/figure_included.tikz}\n', '\n', '% should not be be replaced - no preceding tikzsetnextfilename command\n', '\\begin{tikzpicture}\n', '    \\node (test) at (0,0) {Test3};\n', '\\end{tikzpicture}\n', '\n', '\\tikzsetnextfilename{test_no_match}\n', '\\begin{tikzpicture}\n', '    \\node (test) at (0,0) {Test4};\n', '\\end{tikzpicture}\n', '\n', '\\end{document}\n'], {'input_folder': 'tex', 'images_allowlist': {'images/im2_included.jpg': 200, 'images/im3_included.png': 400}, 'resize_images': True, 'im_size': 100, 'compress_pdf': False, 'pdf_im_resolution': 500, 'commands_to_delete': ['mytodo'], 'commands_only_to_delete': ['red'], 'environments_to_delete': ['mynote'], 'use_external_tikz': 'ext_tikz', 'keep_bib': False, 'to_delete': ['\\.aux$', '\\.sh$', '\\.blg$', '\\.brf$', '\\.log$', '\\.out$', '\\.ps$', '\\.dvi$', '\\.synctex.gz$', '~$', '\\.backup$', '\\.gitignore$', '\\.DS_Store$', '\\.svg$', '^\\.idea', '\\.dpth$', '\\.md5$', '\\.dep$', '\\.auxlock$', '\\.fls$', '\\.fdb_latexmk$', '\\.bib$'], 'figures_to_copy_if_referenced': ['\\.png$', '\\.jpg$', '\\.jpeg$', '\\.pdf$'], 'output_folder': '/local/rcs/XXX/code/pytrace-collector/logs/self_collected/tried/google-research+arxiv-latex-cleaner/google-research+arxiv-latex-cleaner/tex_arXiv'})

Question: What is the value of 'command' in line 8 after executing '_remove_comments_and_commands_to_delete(['\\begin{document}\n', 'Text\n', '% Whole line comment\n', '\n', 'Text% Inline comment\n', '\\begin{comment}\n', 'This is an environment comment.\n', '\\end{comment}\n', '\n', 'This is a percent \\%.\n', '% Whole line comment without newline\n', '\\includegraphics{images/im1_included.png}\n', '%\\includegraphics{images/im_not_included}\n', '\\includegraphics{images/im3_included.png}\n', '\\includegraphics{%\n', '  images/im4_included.png%\n', '  }\n', '\\includegraphics[width=.5\\linewidth]{%\n', '  images/im5_included.jpg}\n', '%\\includegraphics{%\n', '%  images/im4_not_included.png\n', '%  }\n', '%\\includegraphics[width=.5\\linewidth]{%\n', '%  images/im5_not_included.jpg}\n', '\n', '% test whatever the path satrting with dot works when include graphics\n', '\\includegraphics{./images/im3_included.png}\n', '\n', 'This line should\\mytodo{Do this later} not be separated\n', '\\mytodo{This is a todo command with a nested \\textit{command}.\n', 'Please remember that up to \\texttt{2 levels} of \\textit{nesting} are supported.}\n', 'from this one.\n', '\n', '\\begin{mynote}\n', '  This is a custom environment that could be excluded.\n', '\\end{mynote}\n', '\n', '\\newif\\ifvar\n', '\n', '\\ifvar\n', '\\if    false\n', '\\if false\n', '\\if 0\n', '\\iffalse\n', '\\ifvar\n', 'Text\n', '\\fi\n', '\\fi\n', '\\fi\n', '\\fi\n', '\\fi\n', '\\fi\n', '\n', '\\newcommand{\\red}[1]{{\\color{red} #1}}\n', 'hello test \\red{hello\n', 'test \\red{hello}}\n', 'test\n', '\n', '% content after this line should not be cleaned if \\end{document} is in a comment\n', '\n', '\\input{figures/figure_included.tex}\n', '% \\input{figures/figure_not_included.tex}\n', '\n', '% Test for tikzpicture feature\n', '% should be replaced\n', '\\tikzsetnextfilename{test1}\n', '\\begin{tikzpicture}\n', '    \\node (test) at (0,0) {Test1};\n', '\\end{tikzpicture}\n', '\n', '% should be replaced in included file\n', '\\input{figures/figure_included.tikz}\n', '\n', '% should not be be replaced - no preceding tikzsetnextfilename command\n', '\\begin{tikzpicture}\n', '    \\node (test) at (0,0) {Test3};\n', '\\end{tikzpicture}\n', '\n', '\\tikzsetnextfilename{test_no_match}\n', '\\begin{tikzpicture}\n', '    \\node (test) at (0,0) {Test4};\n', '\\end{tikzpicture}\n', '\n', '\\end{document}\n'], {'input_folder': 'tex', 'images_allowlist': {'images/im2_included.jpg': 200, 'images/im3_included.png': 400}, 'resize_images': True, 'im_size': 100, 'compress_pdf': False, 'pdf_im_resolution': 500, 'commands_to_delete': ['mytodo'], 'commands_only_to_delete': ['red'], 'environments_to_delete': ['mynote'], 'use_external_tikz': 'ext_tikz', 'keep_bib': False, 'to_delete': ['\\.aux$', '\\.sh$', '\\.blg$', '\\.brf$', '\\.log$', '\\.out$', '\\.ps$', '\\.dvi$', '\\.synctex.gz$', '~$', '\\.backup$', '\\.gitignore$', '\\.DS_Store$', '\\.svg$', '^\\.idea', '\\.dpth$', '\\.md5$', '\\.dep$', '\\.auxlock$', '\\.fls$', '\\.fdb_latexmk$', '\\.bib$'], 'figures_to_copy_if_referenced': ['\\.png$', '\\.jpg$', '\\.jpeg$', '\\.pdf$'], 'output_folder': '/local/rcs/XXX/code/pytrace-collector/logs/self_collected/tried/google-research+arxiv-latex-cleaner/google-research+arxiv-latex-cleaner/tex_arXiv'})'?

Answer: 'red'


def apply_changes(file_path: str, changes: List, confirm: bool = False):
    """
    Pass changes as loaded json (list of dicts)
    """
    with open(file_path) as f: # [STATE] f = <_io.TextIOWrapper name='/tmp/tmp6qrrn_j9' mode='r' encoding='UTF-8'> [/STATE]
        original_file_lines = f.readlines() # [STATE] original_file_lines = ['first line\n', 'second line\n', 'third line'] [/STATE]

    # Filter out explanation elements
    operation_changes = [change for change in changes if "operation" in change] # [STATE] operation_changes = [{'operation': 'Replace', 'line': 2, 'content': 'new second line'}] [/STATE]
    explanations = [ # [STATE] explanations = [] [/STATE]
        change["explanation"] for change in changes if "explanation" in change
    ]

    # Sort the changes in reverse line order
    operation_changes.sort(key=lambda x: x["line"], reverse=True)

    file_lines = original_file_lines.copy() # [STATE] file_lines = ['first line\n', 'second line\n', 'third line'] [/STATE]
    for change in operation_changes: #  [STATE] change = {'operation': 'Replace', 'line': 2, 'content': 'new second line'} [/STATE]
        operation = change["operation"] # [STATE] operation = 'Replace' [/STATE]
        line = change["line"] # [STATE] line = 2 [/STATE]
        content = change["content"] # [STATE] content = 'new second line' [/STATE]

        if operation == "Replace":
            file_lines[line - 1] = content + "\n" # [STATE] file_lines = ['first line\n', 'new second line\n', 'third line'] [/STATE]
        elif operation == "Delete":
            del file_lines[line - 1]
        elif operation == "InsertAfter":
            file_lines.insert(line, content + "\n")

    # Print explanations
    cprint("Explanations:", "blue")
    for explanation in explanations:
        cprint(f"- {explanation}", "blue")

    # Display changes diff
    print("\nChanges to be made:")
    diff = difflib.unified_diff(original_file_lines, file_lines, lineterm="") # [STATE] diff = <generator object unified_diff at 0x7f5b71b2cba0> [/STATE]
    for line in diff: #  [STATE] line = '--- ' [/STATE] [STATE] line = '+++ ' [/STATE] [STATE] line = '@@ -1,3 +1,3 @@' [/STATE] [STATE] line = ' first line\n' [/STATE] [STATE] line = '-second line\n' [/STATE] [STATE] line = '+new second line\n' [/STATE] [STATE] line = ' third line' [/STATE]
        if line.startswith("+"):
            cprint(line, "green", end="")
        elif line.startswith("-"):
            cprint(line, "red", end="")
        else:
            print(line, end="")

    if confirm:
        # check if user wants to apply changes or exit
        confirmation = input("Do you want to apply these changes? (y/n): ")
        if confirmation.lower() != "y":
            print("Changes not applied")
            sys.exit(0)

    with open(file_path, "w") as f: # [STATE] f = <_io.TextIOWrapper name='/tmp/tmp6qrrn_j9' mode='w' encoding='UTF-8'> [/STATE]
        f.writelines(file_lines)
    print("Changes applied.")

apply_changes('/tmp/tmp6qrrn_j9', [{'operation': 'Replace', 'line': 2, 'content': 'new second line'}], False)

1: def apply_changes(file_path: str, changes: List, confirm: bool = False):
2:     """
3:     Pass changes as loaded json (list of dicts)
4:     """
5:     with open(file_path) as f:
6:         original_file_lines = f.readlines()
7:
8:     # Filter out explanation elements
9:     operation_changes = [change for change in changes if "operation" in change]
10:     explanations = [
11:         change["explanation"] for change in changes if "explanation" in change
12:     ]
13:
14:     # Sort the changes in reverse line order
15:     operation_changes.sort(key=lambda x: x["line"], reverse=True)
16:
17:     file_lines = original_file_lines.copy()
18:     for change in operation_changes:
19:         operation = change["operation"]
20:         line = change["line"]
21:         content = change["content"]
22:
23:         if operation == "Replace":
24:             file_lines[line - 1] = content + "\n"
25:         elif operation == "Delete":
26:             del file_lines[line - 1]
27:         elif operation == "InsertAfter":
28:             file_lines.insert(line, content + "\n")
29:
30:     # Print explanations
31:     cprint("Explanations:", "blue")
32:     for explanation in explanations:
33:         cprint(f"- {explanation}", "blue")
34:
35:     # Display changes diff
36:     print("\nChanges to be made:")
37:     diff = difflib.unified_diff(original_file_lines, file_lines, lineterm="")
38:     for line in diff:
39:         if line.startswith("+"):
40:             cprint(line, "green", end="")
41:         elif line.startswith("-"):
42:             cprint(line, "red", end="")
43:         else:
44:             print(line, end="")
45:
46:     if confirm:
47:         # check if user wants to apply changes or exit
48:         confirmation = input("Do you want to apply these changes? (y/n): ")
49:         if confirmation.lower() != "y":
50:             print("Changes not applied")
51:             sys.exit(0)
52:
53:     with open(file_path, "w") as f:
54:         f.writelines(file_lines)
55:     print("Changes applied.")
56:
57: apply_changes('/tmp/tmp6qrrn_j9', [{'operation': 'Replace', 'line': 2, 'content': 'new second line'}], False)

Question: What is the value of 'f' in line 53 after executing 'apply_changes('/tmp/tmp6qrrn_j9', [{'operation': 'Replace', 'line': 2, 'content': 'new second line'}], False)'?

Answer: <_io.TextIOWrapper name='/tmp/tmp6qrrn_j9' mode='w' encoding='UTF-8'>


def parse_layout(layout_str):
    """Parse a layout string

    Return a dict
        {'walls': list_of_wall_coordinates,
         'food' : list_of_food_coordinates,
         'bot'  : list_of_4_bot_coordinate}

    A layout string is composed of wall characters '#', food characters '.', and
    bot characters '0', '1', '2', and '3'.

    Valid layouts must be enclosed by walls and be of rectangular shape. Example:

     ########
     #0  .  #
     #2    1#
     #  .  3#
     ########

    If items are overlapping, several layout strings can be concateneted:
     ########
     #0  .  #
     #     1#
     #  .  3#
     ########
     ########
     #2  .  #
     #     1#
     #  .  3#
     ########

     In this case, bot '0' and bot '2' are on top of each other at position (1,1)
    """
    layout_list = [] # [STATE] layout_list = [] [/STATE]
    start = False # [STATE] start = False [/STATE]
    for i, line in enumerate(layout_str.splitlines()): #  [STATE] i = 0 [/STATE] [STATE] line = '' [/STATE] [STATE] i = 1 [/STATE] [STATE] line = '        ##################' [/STATE] [STATE] i = 2 [/STATE] [STATE] line = '        #. ... .##.     3#' [/STATE] [STATE] i = 3 [/STATE] [STATE] line = '        # # #  .  .### #1#' [/STATE] [STATE] i = 4 [/STATE] [STATE] line = '        # # ##.   .      #' [/STATE] [STATE] i = 5 [/STATE] [STATE] line = '        #      .   .## # #' [/STATE] [STATE] i = 6 [/STATE] [STATE] line = '        #0# ###.  .  # # #' [/STATE] [STATE] i = 7 [/STATE] [STATE] line = '        #2     .##. ... .#' [/STATE] [STATE] i = 8 [/STATE] [STATE] line = '        ################## ' [/STATE]
        row = line.strip() #  [STATE] row = '' [/STATE] [STATE] row = '##################' [/STATE] [STATE] row = '#. ... .##.     3#' [/STATE] [STATE] row = '# # #  .  .### #1#' [/STATE] [STATE] row = '# # ##.   .      #' [/STATE] [STATE] row = '#      .   .## # #' [/STATE] [STATE] row = '#0# ###.  .  # # #' [/STATE] [STATE] row = '#2     .##. ... .#' [/STATE]
        if not row:
            # ignore emptylines
            continue
        if not start:
            # start a new layout
            # check that row is a valid opening string
            if row.count('#') != len(row):
                raise ValueError(f"Layout does not start with a row of walls (line: {i})!")
            current_layout = [row] # [STATE] current_layout = ['##################'] [/STATE]
            start = True # [STATE] start = True [/STATE]
            continue
        # we are in the middle of a layout, just append to the current
        # layout unless we detect the closing string
        current_layout.append(row) #  [STATE] current_layout = ['##################', '#. ... .##.     3#'] [/STATE] [STATE] current_layout = ['##################', '#. ... .##.     3#', '# # #  .  .### #1#'] [/STATE] [STATE] current_layout = ['##################', '#. ... .##.     3#', '# # #  .  .### #1#', '# # ##.   .      #'] [/STATE] [STATE] current_layout = ['##################', '#. ... .##.     3#', '# # #  .  .### #1#', '# # ##.   .      #', '#      .   .## # #'] [/STATE] [STATE] current_layout = ['##################', '#. ... .##.     3#', '# # #  .  .### #1#', '# # ##.   .      #', '#      .   .## # #', '#0# ###.  .  # # #'] [/STATE] [STATE] current_layout = ['##################', '#. ... .##.     3#', '# # #  .  .### #1#', '# # ##.   .      #', '#      .   .## # #', '#0# ###.  .  # # #', '#2     .##. ... .#'] [/STATE] [STATE] current_layout = ['##################', '#. ... .##.     3#', '# # #  .  .### #1#', '# # ##.   .      #', '#      .   .## # #', '#0# ###.  .  # # #', '#2     .##. ... .#', '##################'] [/STATE]
        if row.count('#') == len(row):
            # this is a closing string
            # append the layout to tha layout list
            layout_list.append('\n'.join(current_layout)) # [STATE] layout_list = ['##################\n#. ... .##.     3#\n# # #  .  .### #1#\n# # ##.   .      #\n#      .   .## # #\n#0# ###.  .  # # #\n#2     .##. ... .#\n##################'] [/STATE]
            start = False # [STATE] start = False [/STATE]

    if start:
        # the last layout has not been closed, complain here!
        raise ValueError(f"Layout does not end with a row of walls (line: {i})!")

    # initialize walls, food and bots from the first layout
    out = parse_single_layout(layout_list.pop(0)) # [STATE] out = {'walls': [(0, 0), (0, 1), (0, 2), (0, 3), (0, 4), (0, 5), (0, 6), (0, 7), (1, 0), (1, 7), (2, 0), (2, 2), (2, 3), (2, 5), (2, 7), (3, 0), (3, 7), (4, 0), (4, 2), (4, 3), (4, 5), (4, 7), (5, 0), (5, 3), (5, 5), (5, 7), (6, 0), (6, 5), (6, 7), (7, 0), (7, 7), (8, 0), (8, 1), (8, 6), (8, 7), (9, 0), (9, 1), (9, 6), (9, 7), (10, 0), (10, 7), (11, 0), (11, 2), (11, 7), (12, 0), (12, 2), (12, 4), (12, 7), (13, 0), (13, 2), (13, 4), (13, 5), (13, 7), (14, 0), (14, 7), (15, 0), (15, 2), (15, 4), (15, 5), (15, 7), (16, 0), (16, 7), (17, 0), (17, 1), (17, 2), (17, 3), (17, 4), (17, 5), (17, 6), (17, 7)], 'food': [(1, 1), (3, 1), (4, 1), (5, 1), (6, 3), (7, 1), (7, 2), (7, 4), (7, 5), (7, 6), (10, 1), (10, 2), (10, 3), (10, 5), (10, 6), (11, 4), (12, 6), (13, 6), (14, 6), (16, 6)], 'bots': [(1, 5), (16, 2), (1, 6), (16, 1)]} [/STATE] # [STATE] layout_list = [] [/STATE]
    for layout in layout_list:
        items = parse_layout(layout)
        # walls should always be the same
        if items['walls'] != out['walls']:
            raise ValueError('Walls are not equal in all layouts!')
        # add the food, removing duplicates
        out['food'] = list(set(out['food'] + items['food']))
        # add the bots
        for bot_idx, bot_pos in enumerate(items['bots']):
            if bot_pos:
                # this bot position is not None, overwrite whatever we had before
                out['bots'][bot_idx] = bot_pos

    return out

parse_layout('\n        ##################\n        #. ... .##.     3#\n        # # #  .  .### #1#\n        # # ##.   .      #\n        #      .   .## # #\n        #0# ###.  .  # # #\n        #2     .##. ... .#\n        ################## ')

1: def parse_layout(layout_str):
2:     """Parse a layout string
3:
4:     Return a dict
5:         {'walls': list_of_wall_coordinates,
6:          'food' : list_of_food_coordinates,
7:          'bot'  : list_of_4_bot_coordinate}
8:
9:     A layout string is composed of wall characters '#', food characters '.', and
10:     bot characters '0', '1', '2', and '3'.
11:
12:     Valid layouts must be enclosed by walls and be of rectangular shape. Example:
13:
14:      ########
15:      #0  .  #
16:      #2    1#
17:      #  .  3#
18:      ########
19:
20:
21:     If items are overlapping, several layout strings can be concateneted:
22:      ########
23:      #0  .  #
24:      #     1#
25:      #  .  3#
26:      ########
27:      ########
28:      #2  .  #
29:      #     1#
30:      #  .  3#
31:      ########
32:
33:      In this case, bot '0' and bot '2' are on top of each other at position (1,1)
34:     """
35:     layout_list = []
36:     start = False
37:     for i, line in enumerate(layout_str.splitlines()):
38:         row = line.strip()
39:         if not row:
40:             # ignore emptylines
41:             continue
42:         if not start:
43:             # start a new layout
44:             # check that row is a valid opening string
45:             if row.count('#') != len(row):
46:                 raise ValueError(f"Layout does not start with a row of walls (line: {i})!")
47:             current_layout = [row]
48:             start = True
49:             continue
50:         # we are in the middle of a layout, just append to the current
51:         # layout unless we detect the closing string
52:         current_layout.append(row)
53:         if row.count('#') == len(row):
54:             # this is a closing string
55:             # append the layout to tha layout list
56:             layout_list.append('\n'.join(current_layout))
57:             start = False
58:
59:     if start:
60:         # the last layout has not been closed, complain here!
61:         raise ValueError(f"Layout does not end with a row of walls (line: {i})!")
62:
63:     # initialize walls, food and bots from the first layout
64:     out = parse_single_layout(layout_list.pop(0))
65:     for layout in layout_list:
66:         items = parse_layout(layout)
67:         # walls should always be the same
68:         if items['walls'] != out['walls']:
69:             raise ValueError('Walls are not equal in all layouts!')
70:         # add the food, removing duplicates
71:         out['food'] = list(set(out['food'] + items['food']))
72:         # add the bots
73:         for bot_idx, bot_pos in enumerate(items['bots']):
74:             if bot_pos:
75:                 # this bot position is not None, overwrite whatever we had before
76:                 out['bots'][bot_idx] = bot_pos
77:
78:     return out
79:
80: parse_layout('\n        ##################\n        #. ... .##.     3#\n        # # #  .  .### #1#\n        # # ##.   .      #\n        #      .   .## # #\n        #0# ###.  .  # # #\n        #2     .##. ... .#\n        ################## ')

Question: What is the value of 'out' in line 64 after executing 'parse_layout('\n        ##################\n        #. ... .##.     3#\n        # # #  .  .### #1#\n        # # ##.   .      #\n        #      .   .## # #\n        #0# ###.  .  # # #\n        #2     .##. ... .#\n        ################## ')'?

Answer: {'walls': [(0, 0), (0, 1), (0, 2), (0, 3), (0, 4), (0, 5), (0, 6), (0, 7), (1, 0), (1, 7), (2, 0), (2, 2), (2, 3), (2, 5), (2, 7), (3, 0), (3, 7), (4, 0), (4, 2), (4, 3), (4, 5), (4, 7), (5, 0), (5, 3), (5, 5), (5, 7), (6, 0), (6, 5), (6, 7), (7, 0), (7, 7), (8, 0), (8, 1), (8, 6), (8, 7), (9, 0), (9, 1), (9, 6), (9, 7), (10, 0), (10, 7), (11, 0), (11, 2), (11, 7), (12, 0), (12, 2), (12, 4), (12, 7), (13, 0), (13, 2), (13, 4), (13, 5), (13, 7), (14, 0), (14, 7), (15, 0), (15, 2), (15, 4), (15, 5), (15, 7), (16, 0), (16, 7), (17, 0), (17, 1), (17, 2), (17, 3), (17, 4), (17, 5), (17, 6), (17, 7)], 'food': [(1, 1), (3, 1), (4, 1), (5, 1), (6, 3), (7, 1), (7, 2), (7, 4), (7, 5), (7, 6), (10, 1), (10, 2), (10, 3), (10, 5), (10, 6), (11, 4), (12, 6), (13, 6), (14, 6), (16, 6)], 'bots': [(1, 5), (16, 2), (1, 6), (16, 1)]}


def parse_single_layout(layout_str):
    """Parse a single layout from a string

    See parse_layout for details about valid layout strings.
    """
    # width of the layout (x-axis)
    width = None # [STATE] width = None [/STATE]
    # list of layout rows
    rows = [] # [STATE] rows = [] [/STATE]
    start = False # [STATE] start = False [/STATE]
    for i, line in enumerate(layout_str.splitlines()): #  [STATE] i = 0 [/STATE] [STATE] line = '##################' [/STATE] [STATE] i = 1 [/STATE] [STATE] line = '#. ... .##.     3#' [/STATE] [STATE] i = 2 [/STATE] [STATE] line = '# # #  .  .### #1#' [/STATE] [STATE] i = 3 [/STATE] [STATE] line = '# # ##.   .      #' [/STATE] [STATE] i = 4 [/STATE] [STATE] line = '#      .   .## # #' [/STATE] [STATE] i = 5 [/STATE] [STATE] line = '#0# ###.  .  # # #' [/STATE] [STATE] i = 6 [/STATE] [STATE] line = '#2     .##. ... .#' [/STATE] [STATE] i = 7 [/STATE]
        row = line.strip() #  [STATE] row = '##################' [/STATE] [STATE] row = '#. ... .##.     3#' [/STATE] [STATE] row = '# # #  .  .### #1#' [/STATE] [STATE] row = '# # ##.   .      #' [/STATE] [STATE] row = '#      .   .## # #' [/STATE] [STATE] row = '#0# ###.  .  # # #' [/STATE] [STATE] row = '#2     .##. ... .#' [/STATE]
        if not row:
            # always ignore empty lines
            continue
        # a layout is always started by a full row of walls
        if not start:
            if row.count('#') != len(row):
                raise ValueError(f"Layout must be enclosed by walls (line: {i})!")
            else:
                # start the layout parsing
                start = True # [STATE] start = True [/STATE]
                # set width of layout
                width = len(row) # [STATE] width = 18 [/STATE]
                # check that width is even
                if width % 2:
                    raise ValueError(f"Layout width must be even (found {width})!")
                rows.append(row) # [STATE] rows = ['##################'] [/STATE]
                continue
        # Here we are within the layout
        # every row must have the same length
        if len(row) != width:
            raise ValueError(f"Layout rows have differing widths (line: {i})!")
        # rows are always enclosed by walls
        if row[0] != '#' or row[-1] != '#':
            raise ValueError(f"Layout must be enclosed by walls (line:{i})!")
        # append current row to the list of rows
        rows.append(row) #  [STATE] rows = ['##################', '#. ... .##.     3#'] [/STATE] [STATE] rows = ['##################', '#. ... .##.     3#', '# # #  .  .### #1#'] [/STATE] [STATE] rows = ['##################', '#. ... .##.     3#', '# # #  .  .### #1#', '# # ##.   .      #'] [/STATE] [STATE] rows = ['##################', '#. ... .##.     3#', '# # #  .  .### #1#', '# # ##.   .      #', '#      .   .## # #'] [/STATE] [STATE] rows = ['##################', '#. ... .##.     3#', '# # #  .  .### #1#', '# # ##.   .      #', '#      .   .## # #', '#0# ###.  .  # # #'] [/STATE] [STATE] rows = ['##################', '#. ... .##.     3#', '# # #  .  .### #1#', '# # ##.   .      #', '#      .   .## # #', '#0# ###.  .  # # #', '#2     .##. ... .#'] [/STATE] [STATE] rows = ['##################', '#. ... .##.     3#', '# # #  .  .### #1#', '# # ##.   .      #', '#      .   .## # #', '#0# ###.  .  # # #', '#2     .##. ... .#', '##################'] [/STATE]
        # detect closing row and ignore whatever follows
        if row.count('#') == len(row):
            start = False # [STATE] start = False [/STATE]
            break

    if start:
        # layout has not been closed!
        raise ValueError(f"Layout must be enclosed by walls (line:{i})!")

    # height of the layout (y-axis)
    height = len(rows) # [STATE] height = 8 [/STATE]
    walls = [] # [STATE] walls = [] [/STATE]
    food = [] # [STATE] food = [] [/STATE]
    # bot positions (we assume 4 bots)
    bots = [None]*4 # [STATE] bots = [None, None, None, None] [/STATE]

    # iterate through the grid of characters
    for y, row in enumerate(rows): #  [STATE] y = 0 [/STATE] [STATE] row = '#. ... .##.     3#' [/STATE] [STATE] y = 1 [/STATE] [STATE] row = '# # #  .  .### #1#' [/STATE] [STATE] y = 2 [/STATE] [STATE] row = '# # ##.   .      #' [/STATE] [STATE] y = 3 [/STATE] [STATE] row = '#      .   .## # #' [/STATE] [STATE] y = 4 [/STATE] [STATE] row = '#0# ###.  .  # # #' [/STATE] [STATE] y = 5 [/STATE] [STATE] row = '#2     .##. ... .#' [/STATE] [STATE] y = 6 [/STATE] [STATE] row = '##################' [/STATE] [STATE] y = 7 [/STATE]
        for x, char in enumerate(row): #  [STATE] x = 0 [/STATE] [STATE] char = '#' [/STATE] [STATE] x = 1 [/STATE] [STATE] x = 2 [/STATE] [STATE] x = 3 [/STATE] [STATE] x = 4 [/STATE] [STATE] x = 5 [/STATE] [STATE] x = 6 [/STATE] [STATE] x = 7 [/STATE] [STATE] x = 8 [/STATE] [STATE] x = 9 [/STATE] [STATE] x = 10 [/STATE] [STATE] x = 11 [/STATE] [STATE] x = 12 [/STATE] [STATE] x = 13 [/STATE] [STATE] x = 14 [/STATE] [STATE] x = 15 [/STATE] [STATE] x = 16 [/STATE] [STATE] x = 17 [/STATE] [STATE] char = '.' [/STATE] [STATE] char = ' ' [/STATE]
            coord = (x, y) #  [STATE] coord = (0, 0) [/STATE] [STATE] coord = (1, 0) [/STATE] [STATE] coord = (2, 0) [/STATE] [STATE] coord = (3, 0) [/STATE] [STATE] coord = (4, 0) [/STATE] [STATE] coord = (5, 0) [/STATE] [STATE] coord = (6, 0) [/STATE] [STATE] coord = (7, 0) [/STATE] [STATE] coord = (8, 0) [/STATE] [STATE] coord = (9, 0) [/STATE] [STATE] coord = (10, 0) [/STATE] [STATE] coord = (11, 0) [/STATE] [STATE] coord = (12, 0) [/STATE] [STATE] coord = (13, 0) [/STATE] [STATE] coord = (14, 0) [/STATE] [STATE] coord = (15, 0) [/STATE] [STATE] coord = (16, 0) [/STATE] [STATE] coord = (17, 0) [/STATE] [STATE] coord = (0, 1) [/STATE] [STATE] coord = (1, 1) [/STATE] [STATE] coord = (2, 1) [/STATE]
            # assign the char to the corresponding list
            if char == '#':
                # wall
                walls.append(coord) #  [STATE] walls = [(0, 0)] [/STATE] [STATE] walls = [(0, 0), (1, 0)] [/STATE] [STATE] walls = [(0, 0), (1, 0), (2, 0)] [/STATE] [STATE] walls = [(0, 0), (1, 0), (2, 0), (3, 0)] [/STATE] [STATE] walls = [(0, 0), (1, 0), (2, 0), (3, 0), (4, 0)] [/STATE] [STATE] walls = [(0, 0), (1, 0), (2, 0), (3, 0), (4, 0), (5, 0)] [/STATE] [STATE] walls = [(0, 0), (1, 0), (2, 0), (3, 0), (4, 0), (5, 0), (6, 0)] [/STATE] [STATE] walls = [(0, 0), (1, 0), (2, 0), (3, 0), (4, 0), (5, 0), (6, 0), (7, 0)] [/STATE] [STATE] walls = [(0, 0), (1, 0), (2, 0), (3, 0), (4, 0), (5, 0), (6, 0), (7, 0), (8, 0)] [/STATE] [STATE] walls = [(0, 0), (1, 0), (2, 0), (3, 0), (4, 0), (5, 0), (6, 0), (7, 0), (8, 0), (9, 0)] [/STATE] [STATE] walls = [(0, 0), (1, 0), (2, 0), (3, 0), (4, 0), (5, 0), (6, 0), (7, 0), (8, 0), (9, 0), (10, 0)] [/STATE] [STATE] walls = [(0, 0), (1, 0), (2, 0), (3, 0), (4, 0), (5, 0), (6, 0), (7, 0), (8, 0), (9, 0), (10, 0), (11, 0)] [/STATE] [STATE] walls = [(0, 0), (1, 0), (2, 0), (3, 0), (4, 0), (5, 0), (6, 0), (7, 0), (8, 0), (9, 0), (10, 0), (11, 0), (12, 0)] [/STATE] [STATE] walls = [(0, 0), (1, 0), (2, 0), (3, 0), (4, 0), (5, 0), (6, 0), (7, 0), (8, 0), (9, 0), (10, 0), (11, 0), (12, 0), (13, 0)] [/STATE] [STATE] walls = [(0, 0), (1, 0), (2, 0), (3, 0), (4, 0), (5, 0), (6, 0), (7, 0), (8, 0), (9, 0), (10, 0), (11, 0), (12, 0), (13, 0), (14, 0)] [/STATE] [STATE] walls = [(0, 0), (1, 0), (2, 0), (3, 0), (4, 0), (5, 0), (6, 0), (7, 0), (8, 0), (9, 0), (10, 0), (11, 0), (12, 0), (13, 0), (14, 0), (15, 0)] [/STATE] [STATE] walls = [(0, 0), (1, 0), (2, 0), (3, 0), (4, 0), (5, 0), (6, 0), (7, 0), (8, 0), (9, 0), (10, 0), (11, 0), (12, 0), (13, 0), (14, 0), (15, 0), (16, 0)] [/STATE] [STATE] walls = [(0, 0), (1, 0), (2, 0), (3, 0), (4, 0), (5, 0), (6, 0), (7, 0), (8, 0), (9, 0), (10, 0), (11, 0), (12, 0), (13, 0), (14, 0), (15, 0), (16, 0), (17, 0)] [/STATE] [STATE] walls = [(0, 0), (1, 0), (2, 0), (3, 0), (4, 0), (5, 0), (6, 0), (7, 0), (8, 0), (9, 0), (10, 0), (11, 0), (12, 0), (13, 0), (14, 0), (15, 0), (16, 0), (17, 0), (0, 1)] [/STATE] [STATE] walls = [(0, 0), (1, 0), (2, 0), (3, 0), (4, 0), (5, 0), (6, 0), (7, 0), (8, 0), (9, 0), (10, 0), (11, 0), (12, 0), (13, 0), (14, 0), (15, 0), (16, 0), (17, 0), (0, 1), (8, 1)] [/STATE] [STATE] walls = [(0, 0), (1, 0), (2, 0), (3, 0), (4, 0), (5, 0), (6, 0), (7, 0), (8, 0), (9, 0), (10, 0), (11, 0), (12, 0), (13, 0), (14, 0), (15, 0), (16, 0), (17, 0), (0, 1), (8, 1), (9, 1)] [/STATE]
            elif char == '.':
                # food
                food.append(coord) #  [STATE] food = [(1, 1)] [/STATE] [STATE] food = [(1, 1), (3, 1)] [/STATE] [STATE] food = [(1, 1), (3, 1), (4, 1)] [/STATE] [STATE] food = [(1, 1), (3, 1), (4, 1), (5, 1)] [/STATE] [STATE] food = [(1, 1), (3, 1), (4, 1), (5, 1), (7, 1)] [/STATE] [STATE] food = [(1, 1), (3, 1), (4, 1), (5, 1), (7, 1), (10, 1)] [/STATE] [STATE] food = [(1, 1), (3, 1), (4, 1), (5, 1), (7, 1), (10, 1), (7, 2)] [/STATE] [STATE] food = [(1, 1), (3, 1), (4, 1), (5, 1), (7, 1), (10, 1), (7, 2), (10, 2)] [/STATE] [STATE] food = [(1, 1), (3, 1), (4, 1), (5, 1), (7, 1), (10, 1), (7, 2), (10, 2), (6, 3)] [/STATE] [STATE] food = [(1, 1), (3, 1), (4, 1), (5, 1), (7, 1), (10, 1), (7, 2), (10, 2), (6, 3), (10, 3)] [/STATE] [STATE] food = [(1, 1), (3, 1), (4, 1), (5, 1), (7, 1), (10, 1), (7, 2), (10, 2), (6, 3), (10, 3), (7, 4)] [/STATE] [STATE] food = [(1, 1), (3, 1), (4, 1), (5, 1), (7, 1), (10, 1), (7, 2), (10, 2), (6, 3), (10, 3), (7, 4), (11, 4)] [/STATE] [STATE] food = [(1, 1), (3, 1), (4, 1), (5, 1), (7, 1), (10, 1), (7, 2), (10, 2), (6, 3), (10, 3), (7, 4), (11, 4), (7, 5)] [/STATE] [STATE] food = [(1, 1), (3, 1), (4, 1), (5, 1), (7, 1), (10, 1), (7, 2), (10, 2), (6, 3), (10, 3), (7, 4), (11, 4), (7, 5), (10, 5)] [/STATE] [STATE] food = [(1, 1), (3, 1), (4, 1), (5, 1), (7, 1), (10, 1), (7, 2), (10, 2), (6, 3), (10, 3), (7, 4), (11, 4), (7, 5), (10, 5), (7, 6)] [/STATE] [STATE] food = [(1, 1), (3, 1), (4, 1), (5, 1), (7, 1), (10, 1), (7, 2), (10, 2), (6, 3), (10, 3), (7, 4), (11, 4), (7, 5), (10, 5), (7, 6), (10, 6)] [/STATE] [STATE] food = [(1, 1), (3, 1), (4, 1), (5, 1), (7, 1), (10, 1), (7, 2), (10, 2), (6, 3), (10, 3), (7, 4), (11, 4), (7, 5), (10, 5), (7, 6), (10, 6), (12, 6)] [/STATE] [STATE] food = [(1, 1), (3, 1), (4, 1), (5, 1), (7, 1), (10, 1), (7, 2), (10, 2), (6, 3), (10, 3), (7, 4), (11, 4), (7, 5), (10, 5), (7, 6), (10, 6), (12, 6), (13, 6)] [/STATE] [STATE] food = [(1, 1), (3, 1), (4, 1), (5, 1), (7, 1), (10, 1), (7, 2), (10, 2), (6, 3), (10, 3), (7, 4), (11, 4), (7, 5), (10, 5), (7, 6), (10, 6), (12, 6), (13, 6), (14, 6)] [/STATE] [STATE] food = [(1, 1), (3, 1), (4, 1), (5, 1), (7, 1), (10, 1), (7, 2), (10, 2), (6, 3), (10, 3), (7, 4), (11, 4), (7, 5), (10, 5), (7, 6), (10, 6), (12, 6), (13, 6), (14, 6), (16, 6)] [/STATE]
            elif char == ' ':
                # empty
                continue
            else:
                # bot
                try:
                    # we expect an 0<=index<=3
                    bot_idx = int(char) #  [STATE] bot_idx = 3 [/STATE] [STATE] bot_idx = 1 [/STATE] [STATE] bot_idx = 0 [/STATE] [STATE] bot_idx = 2 [/STATE]
                    if bot_idx >= len(bots):
                        # reuse the except below
                        raise ValueError
                except ValueError:
                    raise ValueError(f"Unknown character {char} in maze!")
                bots[bot_idx] = coord #  [STATE] bots = [None, None, None, (16, 1)] [/STATE] [STATE] bots = [None, (16, 2), None, (16, 1)] [/STATE] [STATE] bots = [(1, 5), (16, 2), None, (16, 1)] [/STATE] [STATE] bots = [(1, 5), (16, 2), (1, 6), (16, 1)] [/STATE]
    walls.sort() # [STATE] walls = [(0, 0), (0, 1), (0, 2), (0, 3), (0, 4), (0, 5), (0, 6), (0, 7), (1, 0), (1, 7), (2, 0), (2, 2), (2, 3), (2, 5), (2, 7), (3, 0), (3, 7), (4, 0), (4, 2), (4, 3), (4, 5), (4, 7), (5, 0), (5, 3), (5, 5), (5, 7), (6, 0), (6, 5), (6, 7), (7, 0), (7, 7), (8, 0), (8, 1), (8, 6), (8, 7), (9, 0), (9, 1), (9, 6), (9, 7), (10, 0), (10, 7), (11, 0), (11, 2), (11, 7), (12, 0), (12, 2), (12, 4), (12, 7), (13, 0), (13, 2), (13, 4), (13, 5), (13, 7), (14, 0), (14, 7), (15, 0), (15, 2), (15, 4), (15, 5), (15, 7), (16, 0), (16, 7), (17, 0), (17, 1), (17, 2), (17, 3), (17, 4), (17, 5), (17, 6), (17, 7)] [/STATE]
    food.sort() # [STATE] food = [(1, 1), (3, 1), (4, 1), (5, 1), (6, 3), (7, 1), (7, 2), (7, 4), (7, 5), (7, 6), (10, 1), (10, 2), (10, 3), (10, 5), (10, 6), (11, 4), (12, 6), (13, 6), (14, 6), (16, 6)] [/STATE]
    return {'walls':walls, 'food':food, 'bots':bots}

parse_single_layout('##################\n#. ... .##.     3#\n# # #  .  .### #1#\n# # ##.   .      #\n#      .   .## # #\n#0# ###.  .  # # #\n#2     .##. ... .#\n##################')

1: def parse_single_layout(layout_str):
2:     """Parse a single layout from a string
3:
4:     See parse_layout for details about valid layout strings.
5:     """
6:     # width of the layout (x-axis)
7:     width = None
8:     # list of layout rows
9:     rows = []
10:     start = False
11:     for i, line in enumerate(layout_str.splitlines()):
12:         row = line.strip()
13:         if not row:
14:             # always ignore empty lines
15:             continue
16:         # a layout is always started by a full row of walls
17:         if not start:
18:             if row.count('#') != len(row):
19:                 raise ValueError(f"Layout must be enclosed by walls (line: {i})!")
20:             else:
21:                 # start the layout parsing
22:                 start = True
23:                 # set width of layout
24:                 width = len(row)
25:                 # check that width is even
26:                 if width % 2:
27:                     raise ValueError(f"Layout width must be even (found {width})!")
28:                 rows.append(row)
29:                 continue
30:         # Here we are within the layout
31:         # every row must have the same length
32:         if len(row) != width:
33:             raise ValueError(f"Layout rows have differing widths (line: {i})!")
34:         # rows are always enclosed by walls
35:         if row[0] != '#' or row[-1] != '#':
36:             raise ValueError(f"Layout must be enclosed by walls (line:{i})!")
37:         # append current row to the list of rows
38:         rows.append(row)
39:         # detect closing row and ignore whatever follows
40:         if row.count('#') == len(row):
41:             start = False
42:             break
43:
44:     if start:
45:         # layout has not been closed!
46:         raise ValueError(f"Layout must be enclosed by walls (line:{i})!")
47:
48:     # height of the layout (y-axis)
49:     height = len(rows)
50:     walls = []
51:     food = []
52:     # bot positions (we assume 4 bots)
53:     bots = [None]*4
54:
55:     # iterate through the grid of characters
56:     for y, row in enumerate(rows):
57:         for x, char in enumerate(row):
58:             coord = (x, y)
59:             # assign the char to the corresponding list
60:             if char == '#':
61:                 # wall
62:                 walls.append(coord)
63:             elif char == '.':
64:                 # food
65:                 food.append(coord)
66:             elif char == ' ':
67:                 # empty
68:                 continue
69:             else:
70:                 # bot
71:                 try:
72:                     # we expect an 0<=index<=3
73:                     bot_idx = int(char)
74:                     if bot_idx >= len(bots):
75:                         # reuse the except below
76:                         raise ValueError
77:                 except ValueError:
78:                     raise ValueError(f"Unknown character {char} in maze!")
79:                 bots[bot_idx] = coord
80:     walls.sort()
81:     food.sort()
82:     return {'walls':walls, 'food':food, 'bots':bots}
83:
84: parse_single_layout('##################\n#. ... .##.     3#\n# # #  .  .### #1#\n# # ##.   .      #\n#      .   .## # #\n#0# ###.  .  # # #\n#2     .##. ... .#\n##################')

Question: What is the value of 'height' in line 49 after executing 'parse_single_layout('##################\n#. ... .##.     3#\n# # #  .  .### #1#\n# # ##.   .      #\n#      .   .## # #\n#0# ###.  .  # # #\n#2     .##. ... .#\n##################')'?

Answer: 8


def initial_positions(walls):
    """Calculate initial positions.

    Given the list of walls, returns the free positions that are closest to the
    bottom left and top right corner. The algorithm starts searching from
    (1, height-2) and (width-2, 1) respectively and uses the Manhattan distance
    for judging what is closest. On equal distances, a smaller distance in the
    x value is preferred.
    """
    width = max(walls)[0] + 1 # [STATE] width = 8 [/STATE]
    height = max(walls)[1] + 1 # [STATE] height = 4 [/STATE]

    left_start = (1, height - 2) # [STATE] left_start = (1, 2) [/STATE]
    left = [] # [STATE] left = [] [/STATE]
    right_start = (width - 2, 1) # [STATE] right_start = (6, 1) [/STATE]
    right = [] # [STATE] right = [] [/STATE]

    dist = 0 # [STATE] dist = 0 [/STATE]
    while len(left) < 2:
        # iterate through all possible x distances (inclusive)
        for x_dist in range(dist + 1): #  [STATE] x_dist = 0 [/STATE]
            y_dist = dist - x_dist #  [STATE] y_dist = 0 [/STATE] [STATE] y_dist = 1 [/STATE]
            pos = (left_start[0] + x_dist, left_start[1] - y_dist) #  [STATE] pos = (1, 2) [/STATE] [STATE] pos = (1, 1) [/STATE]
            # if both coordinates are out of bounds, we stop
            if not (0 <= pos[0] < width) and not (0 <= pos[1] < height):
                raise ValueError("Not enough free initial positions.")
            # if one coordinate is out of bounds, we just continue
            if not (0 <= pos[0] < width) or not (0 <= pos[1] < height):
                continue
            # check if the new value is free
            if pos not in walls:
                left.append(pos) #  [STATE] left = [(1, 2)] [/STATE] [STATE] left = [(1, 2), (1, 1)] [/STATE]

            if len(left) == 2:
                break

        dist += 1 #  [STATE] dist = 1 [/STATE] [STATE] dist = 2 [/STATE]

    dist = 0 # [STATE] dist = 0 [/STATE]
    while len(right) < 2:
        # iterate through all possible x distances (inclusive)
        for x_dist in range(dist + 1):
            y_dist = dist - x_dist #  [STATE] y_dist = 0 [/STATE] [STATE] y_dist = 1 [/STATE]
            pos = (right_start[0] - x_dist, right_start[1] + y_dist) #  [STATE] pos = (6, 1) [/STATE] [STATE] pos = (6, 2) [/STATE]
            # if both coordinates are out of bounds, we stop
            if not (0 <= pos[0] < width) and not (0 <= pos[1] < height):
                raise ValueError("Not enough free initial positions.")
            # if one coordinate is out of bounds, we just continue
            if not (0 <= pos[0] < width) or not (0 <= pos[1] < height):
                continue
            # check if the new value is free
            if pos not in walls:
                right.append(pos) #  [STATE] right = [(6, 1)] [/STATE] [STATE] right = [(6, 1), (6, 2)] [/STATE]

            if len(right) == 2:
                break

        dist += 1 #  [STATE] dist = 1 [/STATE] [STATE] dist = 2 [/STATE]

    # lower indices start further away
    left.reverse() # [STATE] left = [(1, 1), (1, 2)] [/STATE]
    right.reverse() # [STATE] right = [(6, 2), (6, 1)] [/STATE]
    return [left[0], right[0], left[1], right[1]]

initial_positions([(0, 0), (0, 1), (0, 2), (0, 3), (1, 0), (1, 3), (2, 0), (2, 1), (2, 3), (3, 0), (3, 1), (3, 3), (4, 0), (4, 1), (4, 3), (5, 0), (5, 3), (6, 0), (6, 3), (7, 0), (7, 1), (7, 2), (7, 3)])

1: def initial_positions(walls):
2:     """Calculate initial positions.
3:
4:     Given the list of walls, returns the free positions that are closest to the
5:     bottom left and top right corner. The algorithm starts searching from
6:     (1, height-2) and (width-2, 1) respectively and uses the Manhattan distance
7:     for judging what is closest. On equal distances, a smaller distance in the
8:     x value is preferred.
9:     """
10:     width = max(walls)[0] + 1
11:     height = max(walls)[1] + 1
12:
13:     left_start = (1, height - 2)
14:     left = []
15:     right_start = (width - 2, 1)
16:     right = []
17:
18:     dist = 0
19:     while len(left) < 2:
20:         # iterate through all possible x distances (inclusive)
21:         for x_dist in range(dist + 1):
22:             y_dist = dist - x_dist
23:             pos = (left_start[0] + x_dist, left_start[1] - y_dist)
24:             # if both coordinates are out of bounds, we stop
25:             if not (0 <= pos[0] < width) and not (0 <= pos[1] < height):
26:                 raise ValueError("Not enough free initial positions.")
27:             # if one coordinate is out of bounds, we just continue
28:             if not (0 <= pos[0] < width) or not (0 <= pos[1] < height):
29:                 continue
30:             # check if the new value is free
31:             if pos not in walls:
32:                 left.append(pos)
33:
34:             if len(left) == 2:
35:                 break
36:
37:         dist += 1
38:
39:     dist = 0
40:     while len(right) < 2:
41:         # iterate through all possible x distances (inclusive)
42:         for x_dist in range(dist + 1):
43:             y_dist = dist - x_dist
44:             pos = (right_start[0] - x_dist, right_start[1] + y_dist)
45:             # if both coordinates are out of bounds, we stop
46:             if not (0 <= pos[0] < width) and not (0 <= pos[1] < height):
47:                 raise ValueError("Not enough free initial positions.")
48:             # if one coordinate is out of bounds, we just continue
49:             if not (0 <= pos[0] < width) or not (0 <= pos[1] < height):
50:                 continue
51:             # check if the new value is free
52:             if pos not in walls:
53:                 right.append(pos)
54:
55:             if len(right) == 2:
56:                 break
57:
58:         dist += 1
59:
60:     # lower indices start further away
61:     left.reverse()
62:     right.reverse()
63:     return [left[0], right[0], left[1], right[1]]
64:
65: initial_positions([(0, 0), (0, 1), (0, 2), (0, 3), (1, 0), (1, 3), (2, 0), (2, 1), (2, 3), (3, 0), (3, 1), (3, 3), (4, 0), (4, 1), (4, 3), (5, 0), (5, 3), (6, 0), (6, 3), (7, 0), (7, 1), (7, 2), (7, 3)])

Question: What is the value of 'left' in line 61 after executing 'initial_positions([(0, 0), (0, 1), (0, 2), (0, 3), (1, 0), (1, 3), (2, 0), (2, 1), (2, 3), (3, 0), (3, 1), (3, 3), (4, 0), (4, 1), (4, 3), (5, 0), (5, 3), (6, 0), (6, 3), (7, 0), (7, 1), (7, 2), (7, 3)])'?

Answer: [(1, 1), (1, 2)]