Fill-Mask
Transformers
Safetensors
prokbert
bioinformatics
genomics
sequence embedding
genomic language models
nucleotide
dna-sequence
promoter-prediction
phage
custom_code
Instructions to use neuralbioinfo/prokbert-mini-long with libraries, inference providers, notebooks, and local apps. Follow these links to get started.
- Libraries
- Transformers
How to use neuralbioinfo/prokbert-mini-long with Transformers:
# Use a pipeline as a high-level helper from transformers import pipeline pipe = pipeline("fill-mask", model="neuralbioinfo/prokbert-mini-long", trust_remote_code=True)# Load model directly from transformers import AutoModelForMaskedLM model = AutoModelForMaskedLM.from_pretrained("neuralbioinfo/prokbert-mini-long", trust_remote_code=True, dtype="auto") - Notebooks
- Google Colab
- Kaggle
| { | |
| "architectures": [ | |
| "ProkBertForMaskedLM" | |
| ], | |
| "attention_probs_dropout_prob": 0.1, | |
| "auto_map": { | |
| "AutoConfig": "neuralbioinfo/nbrg-transformers--models.ProkBertConfig", | |
| "AutoModel": "neuralbioinfo/nbrg-transformers--models.ProkBertModel", | |
| "AutoModelForMaskedLM": "neuralbioinfo/nbrg-transformers--models.ProkBertForMaskedLM", | |
| "AutoModelForSequenceClassification": "neuralbioinfo/nbrg-transformers--models.ProkBertForSequenceClassification" | |
| }, | |
| "classifier_dropout": 0.1, | |
| "classifier_head_type": "linear", | |
| "classifier_mlp_hidden_size": null, | |
| "classifier_pooling": "attention", | |
| "curricular_embedding_size": null, | |
| "curricular_margin": 0.5, | |
| "curricular_scale": 64.0, | |
| "dtype": "float32", | |
| "hidden_act": "gelu", | |
| "hidden_dropout_prob": 0.1, | |
| "hidden_size": 384, | |
| "initializer_range": 0.02, | |
| "intermediate_size": 4096, | |
| "kmer": 6, | |
| "layer_norm_eps": 1e-12, | |
| "max_position_embeddings": 2048, | |
| "model_type": "prokbert", | |
| "num_attention_heads": 6, | |
| "num_hidden_layers": 6, | |
| "pad_token_id": 0, | |
| "position_embedding_type": "relative_key_query", | |
| "shift": 2, | |
| "transformers_version": "4.57.6", | |
| "type_vocab_size": 2, | |
| "use_cache": true, | |
| "vocab_size": 4200 | |
| } | |