canergen's picture
popV version: 0.6.0
fb92f89 verified
{
"query_accuracy": "| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| type B pancreatic cell | 125 | 0.94 | 0.92 | 0.90 | 0.95 | 0.00 | 0.93 | 0.95 | 0.95 | 0.94 |\n| pancreatic acinar cell | 60 | 0.99 | 0.98 | 0.96 | 0.99 | 0.00 | 0.99 | 1.00 | 1.00 | 0.99 |\n| pancreatic A cell | 59 | 0.88 | 0.89 | 0.85 | 0.91 | 0.00 | 0.90 | 0.91 | 0.93 | 0.90 |\n| pancreatic ductal cell | 34 | 1.00 | 1.00 | 1.00 | 1.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |\n| endothelial cell | 27 | 0.96 | 0.92 | 0.88 | 0.94 | 0.00 | 0.90 | 0.98 | 0.98 | 0.96 |\n| pancreatic D cell | 13 | 0.89 | 0.90 | 0.83 | 0.86 | 0.00 | 0.80 | 0.93 | 0.96 | 0.89 |\n| leukocyte | 14 | 1.00 | 1.00 | 1.00 | 0.97 | 0.00 | 0.90 | 1.00 | 1.00 | 1.00 |\n| pancreatic PP cell | 5 | 0.71 | 0.53 | 0.62 | 0.80 | 0.00 | 0.89 | 0.73 | 0.89 | 0.80 |\n| pancreatic stellate cell | 2 | 0.80 | 0.80 | 0.80 | 0.80 | 0.00 | 0.80 | 0.80 | 0.80 | 0.80 |",
"ref_accuracy": "| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| type B pancreatic cell | 1217 | 0.97 | 0.96 | 0.96 | 0.97 | 0.00 | 0.97 | 0.98 | 0.98 | 0.97 |\n| pancreatic acinar cell | 516 | 0.97 | 0.99 | 0.98 | 0.98 | 0.00 | 0.98 | 1.00 | 1.00 | 1.00 |\n| pancreatic A cell | 462 | 0.92 | 0.90 | 0.90 | 0.92 | 0.00 | 0.92 | 0.97 | 0.97 | 0.94 |\n| pancreatic ductal cell | 279 | 0.99 | 0.99 | 0.99 | 0.98 | 0.00 | 0.98 | 1.00 | 1.00 | 1.00 |\n| endothelial cell | 175 | 0.87 | 0.91 | 0.90 | 0.89 | 0.00 | 0.92 | 1.00 | 1.00 | 0.98 |\n| pancreatic D cell | 178 | 0.95 | 0.95 | 0.94 | 0.93 | 0.00 | 0.92 | 0.98 | 0.98 | 0.96 |\n| leukocyte | 106 | 0.92 | 0.98 | 0.93 | 0.92 | 0.00 | 0.96 | 1.00 | 1.00 | 0.99 |\n| pancreatic PP cell | 66 | 0.86 | 0.71 | 0.85 | 0.79 | 0.00 | 0.86 | 0.99 | 0.99 | 0.94 |\n| pancreatic stellate cell | 46 | 0.94 | 0.95 | 0.95 | 0.92 | 0.00 | 0.96 | 1.00 | 1.00 | 0.97 |"
}