Spaces:

Sbhat2026
/

protfunc

Sleeping

App Files Files Community

protfunc / scripts

297 kB

Ctrl+K

Ctrl+K

3 contributors

History: 6 commits

Sbhat2026's picture

Refit per-label thresholds to v2 logit scale (+0.11 micro-F1)

dec2c0c 5 days ago

build_enzyme_finetune_set.py

7.16 kB
Deploy enzyme-fine-tuned head (v2): fix FABLE enzyme-MF blind spot 5 days ago
build_mammal_dataset.py

26.2 kB
perf: ESM embedding cache + 1500aa limit, add research scripts 2 months ago
compare_v1_v2.py

4.35 kB
Deploy enzyme-fine-tuned head (v2): fix FABLE enzyme-MF blind spot 5 days ago
e2e_v2_endpoint.py

1.77 kB
Deploy enzyme-fine-tuned head (v2): fix FABLE enzyme-MF blind spot 5 days ago
eval_checkpoint.py

4.74 kB
perf: ESM embedding cache + 1500aa limit, add research scripts 2 months ago
eval_generalization.py

19.5 kB
perf: ESM embedding cache + 1500aa limit, add research scripts 2 months ago
finetune_enzyme_head.py

9.49 kB
Deploy enzyme-fine-tuned head (v2): fix FABLE enzyme-MF blind spot 5 days ago
finetune_mammal_enriched.py

23.6 kB
fix: catastrophic forgetting + eval_fmax bug in mammal fine-tuning 2 months ago
graph_hpo_sequence.py

10.5 kB
perf: ESM embedding cache + 1500aa limit, add research scripts 2 months ago
hpo.py

24 kB
perf: ESM embedding cache + 1500aa limit, add research scripts 2 months ago
post_train_pipeline.py

22.2 kB
perf: ESM embedding cache + 1500aa limit, add research scripts 2 months ago
post_training.sh

4.24 kB
perf: ESM embedding cache + 1500aa limit, add research scripts 2 months ago
prep_taxon.py

22.9 kB
perf: ESM embedding cache + 1500aa limit, add research scripts 2 months ago
probe_enzyme_calibration.py

6.45 kB
Deploy enzyme-fine-tuned head (v2): fix FABLE enzyme-MF blind spot 5 days ago
probe_logit_centering.py

5.09 kB
Deploy enzyme-fine-tuned head (v2): fix FABLE enzyme-MF blind spot 5 days ago
recalibrate_thresholds_f1.py

18.1 kB
fix: catastrophic forgetting + eval_fmax bug in mammal fine-tuning 2 months ago
refit_v2_thresholds.py

5.77 kB
Refit per-label thresholds to v2 logit scale (+0.11 micro-F1) 5 days ago
run_after_hpo.sh

2.08 kB
perf: ESM embedding cache + 1500aa limit, add research scripts 2 months ago
run_full_pipeline.sh

6.03 kB
perf: ESM embedding cache + 1500aa limit, add research scripts 2 months ago
setup_mlb.py

273 Bytes
feat: v3 model support, GO hierarchy, supplemented features, updated UI 3 months ago
threshold_comparison.py

27.7 kB
perf: ESM embedding cache + 1500aa limit, add research scripts 2 months ago
train_v3_fixed.py

44.6 kB
perf: ESM embedding cache + 1500aa limit, add research scripts 2 months ago