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Autonomous-Scientific-Agents

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Autonomous Scientific Agents 3

Error code:   DatasetGenerationError
Exception:    TypeError
Message:      Couldn't cast array of type
struct<smi_lookup: struct<accuracy: double>, coord_gen: struct<accuracy: double>, geom_opt: struct<accuracy: double>, vib_freq: struct<accuracy: double>, thermo: struct<accuracy: double>, dipole: struct<accuracy: double>, energy: struct<accuracy: double>, react_gibbs: struct<accuracy: double>>
to
{'dipole_from_name': {'accuracy': Value('float64')}, 'dipole_from_smiles': {'accuracy': Value('float64')}, 'energy_from_name': {'accuracy': Value('float64')}, 'energy_from_smiles': {'accuracy': Value('float64')}, 'optimization_from_name': {'accuracy': Value('float64')}, 'optimization_from_smiles': {'accuracy': Value('float64')}, 'reaction_energy': {'accuracy': Value('float64')}, 'smiles_lookup': {'accuracy': Value('float64')}, 'thermochemistry_from_name': {'accuracy': Value('float64')}, 'thermochemistry_from_smiles': {'accuracy': Value('float64')}, 'vibrations_from_name': {'accuracy': Value('float64')}, 'vibrations_from_smiles': {'accuracy': Value('float64')}}
Traceback:    Traceback (most recent call last):
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1779, in _prepare_split_single
                  for key, table in generator:
                                    ^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/packaged_modules/json/json.py", line 299, in _generate_tables
                  self._cast_table(pa_table, json_field_paths=json_field_paths),
                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/packaged_modules/json/json.py", line 128, in _cast_table
                  pa_table = table_cast(pa_table, self.info.features.arrow_schema)
                             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2321, in table_cast
                  return cast_table_to_schema(table, schema)
                         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2255, in cast_table_to_schema
                  cast_array_to_feature(
                File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 1804, in wrapper
                  return pa.chunked_array([func(chunk, *args, **kwargs) for chunk in array.chunks])
                                           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2101, in cast_array_to_feature
                  raise TypeError(f"Couldn't cast array of type\n{_short_str(array.type)}\nto\n{_short_str(feature)}")
              TypeError: Couldn't cast array of type
              struct<smi_lookup: struct<accuracy: double>, coord_gen: struct<accuracy: double>, geom_opt: struct<accuracy: double>, vib_freq: struct<accuracy: double>, thermo: struct<accuracy: double>, dipole: struct<accuracy: double>, energy: struct<accuracy: double>, react_gibbs: struct<accuracy: double>>
              to
              {'dipole_from_name': {'accuracy': Value('float64')}, 'dipole_from_smiles': {'accuracy': Value('float64')}, 'energy_from_name': {'accuracy': Value('float64')}, 'energy_from_smiles': {'accuracy': Value('float64')}, 'optimization_from_name': {'accuracy': Value('float64')}, 'optimization_from_smiles': {'accuracy': Value('float64')}, 'reaction_energy': {'accuracy': Value('float64')}, 'smiles_lookup': {'accuracy': Value('float64')}, 'thermochemistry_from_name': {'accuracy': Value('float64')}, 'thermochemistry_from_smiles': {'accuracy': Value('float64')}, 'vibrations_from_name': {'accuracy': Value('float64')}, 'vibrations_from_smiles': {'accuracy': Value('float64')}}
              
              The above exception was the direct cause of the following exception:
              
              Traceback (most recent call last):
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1347, in compute_config_parquet_and_info_response
                  parquet_operations = convert_to_parquet(builder)
                                       ^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 980, in convert_to_parquet
                  builder.download_and_prepare(
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 882, in download_and_prepare
                  self._download_and_prepare(
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 943, in _download_and_prepare
                  self._prepare_split(split_generator, **prepare_split_kwargs)
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1646, in _prepare_split
                  for job_id, done, content in self._prepare_split_single(
                                               ^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1832, in _prepare_split_single
                  raise DatasetGenerationError("An error occurred while generating the dataset") from e
              datasets.exceptions.DatasetGenerationError: An error occurred while generating the dataset