metadata
dataset_info:
- config_name: sft_cell_context_scbasecount_contrastive_id_last_v1
features:
- name: mode
dtype: large_string
- name: tissue
dtype: large_string
- name: tissue_A
dtype: large_string
- name: tissue_B
dtype: large_string
- name: cell_type
dtype: large_string
- name: cell_type_A
dtype: large_string
- name: cell_type_B
dtype: large_string
- name: question
dtype: large_string
- name: reasoning
dtype: large_string
- name: answer
dtype: large_string
- name: cell_file_A
dtype: large_string
- name: cell_file_B
dtype: large_string
splits:
- name: train
num_bytes: 20850763
num_examples: 3899
- name: validation
num_bytes: 2327454
num_examples: 435
download_size: 7401548
dataset_size: 23178217
- config_name: sft_cell_context_scbasecount_contrastive_v1
features:
- name: mode
dtype: large_string
- name: tissue
dtype: large_string
- name: tissue_A
dtype: large_string
- name: tissue_B
dtype: large_string
- name: cell_type
dtype: large_string
- name: cell_type_A
dtype: large_string
- name: cell_type_B
dtype: large_string
- name: question
dtype: large_string
- name: reasoning
dtype: large_string
- name: answer
dtype: large_string
- name: cell_file_A
dtype: large_string
- name: cell_file_B
dtype: large_string
splits:
- name: train
num_bytes: 20768884
num_examples: 3899
- name: validation
num_bytes: 2318319
num_examples: 435
download_size: 7413306
dataset_size: 23087203
- config_name: sft_cell_context_scbasecount_id_first_v1
features:
- name: sample_id
dtype: large_string
- name: cell_type
dtype: large_string
- name: srx_accession
dtype: large_string
- name: question
dtype: large_string
- name: reasoning
dtype: large_string
- name: answer
dtype: large_string
- name: cell_file
dtype: large_string
splits:
- name: train
num_bytes: 197095968
num_examples: 80517
- name: validation
num_bytes: 24587687
num_examples: 10055
- name: test
num_bytes: 24624785
num_examples: 10057
- name: ood_test
num_bytes: 4614742
num_examples: 1937
download_size: 87200902
dataset_size: 250923182
- config_name: sft_cell_context_scbasecount_v1
features:
- name: sample_id
dtype: large_string
- name: cell_type
dtype: large_string
- name: srx_accession
dtype: large_string
- name: question
dtype: large_string
- name: reasoning
dtype: large_string
- name: answer
dtype: large_string
- name: cell_file
dtype: large_string
splits:
- name: train
num_bytes: 196129764
num_examples: 80517
- name: validation
num_bytes: 24467027
num_examples: 10055
- name: test
num_bytes: 24504101
num_examples: 10057
- name: ood_test
num_bytes: 4591498
num_examples: 1937
download_size: 87447391
dataset_size: 249692390
- config_name: sft_gene_pathway_v6_2_1k
features:
- name: sample_id
dtype: large_string
- name: gene_target
dtype: large_string
- name: cell_type
dtype: large_string
- name: pathway_name
dtype: large_string
- name: pathway_change
dtype: large_string
- name: pathway_magnitude
dtype: large_string
- name: question
dtype: large_string
- name: reasoning
dtype: large_string
- name: answer
dtype: large_string
- name: cell_file
dtype: large_string
splits:
- name: train
num_bytes: 9012157
num_examples: 881
- name: validation
num_bytes: 469557
num_examples: 47
- name: test
num_bytes: 469557
num_examples: 47
download_size: 4723007
dataset_size: 9951271
- config_name: sft_gene_pathway_v7_3_5k
features:
- name: sample_id
dtype: large_string
- name: gene_target
dtype: large_string
- name: cell_type
dtype: large_string
- name: pathway_name
dtype: large_string
- name: pathway_change
dtype: large_string
- name: pathway_magnitude
dtype: large_string
- name: question
dtype: large_string
- name: reasoning
dtype: large_string
- name: answer
dtype: large_string
- name: cell_file
dtype: large_string
splits:
- name: train
num_bytes: 54356168
num_examples: 5320
- name: validation
num_bytes: 6074526
num_examples: 592
- name: test
num_bytes: 6074526
num_examples: 592
download_size: 32979010
dataset_size: 66505220
- config_name: sft_gene_pathway_v7_3_5k_full
features:
- name: sample_id
dtype: large_string
- name: gene_target
dtype: large_string
- name: cell_type
dtype: large_string
- name: pathway_name
dtype: large_string
- name: pathway_change
dtype: large_string
- name: pathway_magnitude
dtype: large_string
- name: question
dtype: large_string
- name: reasoning
dtype: large_string
- name: answer
dtype: large_string
- name: cell_file
dtype: large_string
splits:
- name: train
num_bytes: 71537283
num_examples: 5320
- name: validation
num_bytes: 8015655
num_examples: 592
- name: test
num_bytes: 8015655
num_examples: 592
download_size: 41385153
dataset_size: 87568593
- config_name: sft_gene_pathway_v7_5_50k
features:
- name: sample_id
dtype: string
- name: dataset
dtype: string
- name: gene_target
dtype: string
- name: cell_type
dtype: string
- name: pathway_name
dtype: string
- name: pathway_change
dtype: string
- name: question
dtype: string
- name: reasoning
dtype: string
- name: answer
dtype: string
- name: cell_file
dtype: string
splits:
- name: train
num_bytes: 460379852
num_examples: 47694
- name: validation
num_bytes: 51178178
num_examples: 5300
- name: test
num_bytes: 51178178
num_examples: 5300
download_size: 282563907
dataset_size: 562736208
- config_name: sft_gene_pathway_v7_5_50k_answeronly
features:
- name: sample_id
dtype: string
- name: dataset
dtype: string
- name: gene_target
dtype: string
- name: cell_type
dtype: string
- name: pathway_name
dtype: string
- name: pathway_change
dtype: string
- name: question
dtype: string
- name: reasoning
dtype: string
- name: answer
dtype: string
- name: cell_file
dtype: string
splits:
- name: train
num_bytes: 211700183
num_examples: 47694
- name: validation
num_bytes: 23557703
num_examples: 5300
- name: test
num_bytes: 23557703
num_examples: 5300
download_size: 114277645
dataset_size: 258815589
- config_name: sft_gene_pathway_v7_5_50k_celldesc
features:
- name: sample_id
dtype: string
- name: dataset
dtype: string
- name: gene_target
dtype: string
- name: cell_type
dtype: string
- name: pathway_name
dtype: string
- name: pathway_change
dtype: string
- name: question
dtype: string
- name: reasoning
dtype: string
- name: answer
dtype: string
- name: cell_file
dtype: string
splits:
- name: train
num_bytes: 581780219
num_examples: 47694
- name: validation
num_bytes: 64668220
num_examples: 5300
- name: test
num_bytes: 64668220
num_examples: 5300
download_size: 352430925
dataset_size: 711116659
- config_name: sft_gene_pathway_v7_5_50k_full
features:
- name: sample_id
dtype: string
- name: dataset
dtype: string
- name: gene_target
dtype: string
- name: cell_type
dtype: string
- name: pathway_name
dtype: string
- name: pathway_change
dtype: string
- name: question
dtype: string
- name: reasoning
dtype: string
- name: answer
dtype: string
- name: cell_file
dtype: string
splits:
- name: train
num_bytes: 675647828
num_examples: 47694
- name: validation
num_bytes: 75152138
num_examples: 5300
- name: test
num_bytes: 75152138
num_examples: 5300
download_size: 387294484
dataset_size: 825952104
- config_name: sft_gene_pathway_v7_5_50k_full_answeronly
features:
- name: sample_id
dtype: string
- name: dataset
dtype: string
- name: gene_target
dtype: string
- name: cell_type
dtype: string
- name: pathway_name
dtype: string
- name: pathway_change
dtype: string
- name: question
dtype: string
- name: reasoning
dtype: string
- name: answer
dtype: string
- name: cell_file
dtype: string
splits:
- name: train
num_bytes: 426880414
num_examples: 47694
- name: validation
num_bytes: 47523997
num_examples: 5300
- name: test
num_bytes: 47523997
num_examples: 5300
download_size: 218116042
dataset_size: 521928408
- config_name: sft_gene_pathway_v7_5_50k_full_blinddesc
features:
- name: sample_id
dtype: string
- name: dataset
dtype: string
- name: gene_target
dtype: string
- name: cell_type
dtype: string
- name: pathway_name
dtype: string
- name: pathway_change
dtype: string
- name: question
dtype: string
- name: reasoning
dtype: string
- name: answer
dtype: string
- name: cell_file
dtype: string
splits:
- name: train
num_bytes: 675103641
num_examples: 47694
- name: validation
num_bytes: 75091680
num_examples: 5300
- name: test
num_bytes: 75091680
num_examples: 5300
download_size: 382220592
dataset_size: 825287001
- config_name: sft_gene_pathway_v7_5_50k_full_celldesc
features:
- name: sample_id
dtype: string
- name: dataset
dtype: string
- name: gene_target
dtype: string
- name: cell_type
dtype: string
- name: pathway_name
dtype: string
- name: pathway_change
dtype: string
- name: question
dtype: string
- name: reasoning
dtype: string
- name: answer
dtype: string
- name: cell_file
dtype: string
splits:
- name: train
num_bytes: 796960450
num_examples: 47694
- name: validation
num_bytes: 88634514
num_examples: 5300
- name: test
num_bytes: 88634514
num_examples: 5300
download_size: 469503857
dataset_size: 974229478
- config_name: sft_gene_pathway_v7_5_50k_full_label
features:
- name: sample_id
dtype: string
- name: dataset
dtype: string
- name: gene_target
dtype: string
- name: cell_type
dtype: string
- name: pathway_name
dtype: string
- name: pathway_change
dtype: string
- name: question
dtype: string
- name: reasoning
dtype: string
- name: answer
dtype: string
- name: cell_file
dtype: string
splits:
- name: train
num_bytes: 703436166
num_examples: 47694
- name: validation
num_bytes: 78240106
num_examples: 5300
- name: test
num_bytes: 78240106
num_examples: 5300
download_size: 388226694
dataset_size: 859916378
- config_name: sft_gene_pathway_v7_5_50k_full_labelonly
features:
- name: sample_id
dtype: string
- name: dataset
dtype: string
- name: gene_target
dtype: string
- name: cell_type
dtype: string
- name: pathway_name
dtype: string
- name: pathway_change
dtype: string
- name: question
dtype: string
- name: reasoning
dtype: string
- name: answer
dtype: string
- name: cell_file
dtype: string
splits:
- name: train
num_bytes: 360125162
num_examples: 47694
- name: validation
num_bytes: 40092157
num_examples: 5300
- name: test
num_bytes: 40092157
num_examples: 5300
download_size: 173333220
dataset_size: 440309476
- config_name: sft_gene_pathway_v7_5_50k_labelonly
features:
- name: sample_id
dtype: string
- name: dataset
dtype: string
- name: gene_target
dtype: string
- name: cell_type
dtype: string
- name: pathway_name
dtype: string
- name: pathway_change
dtype: string
- name: question
dtype: string
- name: reasoning
dtype: string
- name: answer
dtype: string
- name: cell_file
dtype: string
splits:
- name: train
num_bytes: 144944931
num_examples: 47694
- name: validation
num_bytes: 16125863
num_examples: 5300
- name: test
num_bytes: 16125863
num_examples: 5300
download_size: 69459792
dataset_size: 177196657
configs:
- config_name: sft_cell_context_scbasecount_contrastive_id_last_v1
data_files:
- split: train
path: sft_cell_context_scbasecount_contrastive_id_last_v1/train-*
- split: validation
path: sft_cell_context_scbasecount_contrastive_id_last_v1/validation-*
- config_name: sft_cell_context_scbasecount_contrastive_v1
data_files:
- split: train
path: sft_cell_context_scbasecount_contrastive_v1/train-*
- split: validation
path: sft_cell_context_scbasecount_contrastive_v1/validation-*
- config_name: sft_cell_context_scbasecount_id_first_v1
data_files:
- split: train
path: sft_cell_context_scbasecount_id_first_v1/train-*
- split: validation
path: sft_cell_context_scbasecount_id_first_v1/validation-*
- split: test
path: sft_cell_context_scbasecount_id_first_v1/test-*
- split: ood_test
path: sft_cell_context_scbasecount_id_first_v1/ood_test-*
- config_name: sft_cell_context_scbasecount_v1
data_files:
- split: train
path: sft_cell_context_scbasecount_v1/train-*
- split: validation
path: sft_cell_context_scbasecount_v1/validation-*
- split: test
path: sft_cell_context_scbasecount_v1/test-*
- split: ood_test
path: sft_cell_context_scbasecount_v1/ood_test-*
- config_name: sft_gene_pathway_v6_2_1k
data_files:
- split: train
path: sft_gene_pathway_v6_2_1k/train-*
- split: validation
path: sft_gene_pathway_v6_2_1k/validation-*
- split: test
path: sft_gene_pathway_v6_2_1k/test-*
- config_name: sft_gene_pathway_v7_3_5k
data_files:
- split: train
path: sft_gene_pathway_v7_3_5k/train-*
- split: validation
path: sft_gene_pathway_v7_3_5k/validation-*
- split: test
path: sft_gene_pathway_v7_3_5k/test-*
- config_name: sft_gene_pathway_v7_3_5k_full
data_files:
- split: train
path: sft_gene_pathway_v7_3_5k_full/train-*
- split: validation
path: sft_gene_pathway_v7_3_5k_full/validation-*
- split: test
path: sft_gene_pathway_v7_3_5k_full/test-*
- config_name: sft_gene_pathway_v7_5_50k
data_files:
- split: train
path: sft_gene_pathway_v7_5_50k/train-*
- split: validation
path: sft_gene_pathway_v7_5_50k/validation-*
- split: test
path: sft_gene_pathway_v7_5_50k/test-*
- config_name: sft_gene_pathway_v7_5_50k_answeronly
data_files:
- split: train
path: sft_gene_pathway_v7_5_50k_answeronly/train-*
- split: validation
path: sft_gene_pathway_v7_5_50k_answeronly/validation-*
- split: test
path: sft_gene_pathway_v7_5_50k_answeronly/test-*
- config_name: sft_gene_pathway_v7_5_50k_celldesc
data_files:
- split: train
path: sft_gene_pathway_v7_5_50k_celldesc/train-*
- split: validation
path: sft_gene_pathway_v7_5_50k_celldesc/validation-*
- split: test
path: sft_gene_pathway_v7_5_50k_celldesc/test-*
- config_name: sft_gene_pathway_v7_5_50k_full
data_files:
- split: train
path: sft_gene_pathway_v7_5_50k_full/train-*
- split: validation
path: sft_gene_pathway_v7_5_50k_full/validation-*
- split: test
path: sft_gene_pathway_v7_5_50k_full/test-*
- config_name: sft_gene_pathway_v7_5_50k_full_answeronly
data_files:
- split: train
path: sft_gene_pathway_v7_5_50k_full_answeronly/train-*
- split: validation
path: sft_gene_pathway_v7_5_50k_full_answeronly/validation-*
- split: test
path: sft_gene_pathway_v7_5_50k_full_answeronly/test-*
- config_name: sft_gene_pathway_v7_5_50k_full_blinddesc
data_files:
- split: train
path: sft_gene_pathway_v7_5_50k_full_blinddesc/train-*
- split: validation
path: sft_gene_pathway_v7_5_50k_full_blinddesc/validation-*
- split: test
path: sft_gene_pathway_v7_5_50k_full_blinddesc/test-*
- config_name: sft_gene_pathway_v7_5_50k_full_celldesc
data_files:
- split: train
path: sft_gene_pathway_v7_5_50k_full_celldesc/train-*
- split: validation
path: sft_gene_pathway_v7_5_50k_full_celldesc/validation-*
- split: test
path: sft_gene_pathway_v7_5_50k_full_celldesc/test-*
- config_name: sft_gene_pathway_v7_5_50k_full_label
data_files:
- split: train
path: sft_gene_pathway_v7_5_50k_full_label/train-*
- split: validation
path: sft_gene_pathway_v7_5_50k_full_label/validation-*
- split: test
path: sft_gene_pathway_v7_5_50k_full_label/test-*
- config_name: sft_gene_pathway_v7_5_50k_full_labelonly
data_files:
- split: train
path: sft_gene_pathway_v7_5_50k_full_labelonly/train-*
- split: validation
path: sft_gene_pathway_v7_5_50k_full_labelonly/validation-*
- split: test
path: sft_gene_pathway_v7_5_50k_full_labelonly/test-*
- config_name: sft_gene_pathway_v7_5_50k_labelonly
data_files:
- split: train
path: sft_gene_pathway_v7_5_50k_labelonly/train-*
- split: validation
path: sft_gene_pathway_v7_5_50k_labelonly/validation-*
- split: test
path: sft_gene_pathway_v7_5_50k_labelonly/test-*