Datasets:

---

zzqsb

/

PLLM_Structure_Dataset

like 0

Error code:   DatasetGenerationCastError
Exception:    DatasetGenerationCastError
Message:      An error occurred while generating the dataset

All the data files must have the same columns, but at some point there are 6 new columns ({'DNA', 'chain_ids', 'other', 'prot', 'RNA', 'n_chains'}) and 10 missing columns ({'combined_seq', 'error', 'polymer_class', 'chain_id', 'path', 'chunk', 'seq_len', 'index', 'aa_seq', 'threeDi_seq'}).

This happened while the csv dataset builder was generating data using

hf://datasets/zzqsb/PLLM_Structure_Dataset/pdb_id_number_of_chain_gt20.csv (at revision 89146672490f92673f895fa9f5a864ad64465c59)

Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback:    Traceback (most recent call last):
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1831, in _prepare_split_single
                  writer.write_table(table)
                File "/usr/local/lib/python3.12/site-packages/datasets/arrow_writer.py", line 714, in write_table
                  pa_table = table_cast(pa_table, self._schema)
                             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2272, in table_cast
                  return cast_table_to_schema(table, schema)
                         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2218, in cast_table_to_schema
                  raise CastError(
              datasets.table.CastError: Couldn't cast
              pdb_id: string
              n_chains: int64
              prot: int64
              DNA: int64
              RNA: int64
              other: int64
              chain_ids: string
              -- schema metadata --
              pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 1023
              to
              {'index': Value('int64'), 'pdb_id': Value('string'), 'chain_id': Value('string'), 'aa_seq': Value('string'), 'threeDi_seq': Value('string'), 'combined_seq': Value('string'), 'seq_len': Value('float64'), 'chunk': Value('string'), 'path': Value('string'), 'polymer_class': Value('string'), 'error': Value('float64')}
              because column names don't match
              
              During handling of the above exception, another exception occurred:
              
              Traceback (most recent call last):
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1455, in compute_config_parquet_and_info_response
                  parquet_operations = convert_to_parquet(builder)
                                       ^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1054, in convert_to_parquet
                  builder.download_and_prepare(
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 894, in download_and_prepare
                  self._download_and_prepare(
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 970, in _download_and_prepare
                  self._prepare_split(split_generator, **prepare_split_kwargs)
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1702, in _prepare_split
                  for job_id, done, content in self._prepare_split_single(
                                               ^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1833, in _prepare_split_single
                  raise DatasetGenerationCastError.from_cast_error(
              datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
              
              All the data files must have the same columns, but at some point there are 6 new columns ({'DNA', 'chain_ids', 'other', 'prot', 'RNA', 'n_chains'}) and 10 missing columns ({'combined_seq', 'error', 'polymer_class', 'chain_id', 'path', 'chunk', 'seq_len', 'index', 'aa_seq', 'threeDi_seq'}).
              
              This happened while the csv dataset builder was generating data using
              
              hf://datasets/zzqsb/PLLM_Structure_Dataset/pdb_id_number_of_chain_gt20.csv (at revision 89146672490f92673f895fa9f5a864ad64465c59)
              
              Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)