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nickrb

Re-translate protenix-v2 under jax 0.10

81a257b verified about 1 month ago

.gitattributes

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LICENSE

11.8 kB
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README.md

3.73 kB
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clusters-by-entity-40.txt

9.39 MB
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components.v20240608.cif

428 MB
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components.v20240608.cif.rdkit_mol.pkl
Detected Pickle imports (4)
- "rdkit.Chem.rdchem.Mol",
- "numpy.ndarray",
- "numpy.core.multiarray._reconstruct",
- "numpy.dtype"
How to fix it?
126 MB
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protenix-v2.eqx

1.86 GB
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protenix-v2.pt

1.86 GB
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protenix-v2.skeleton.pkl
Detected Pickle imports (40)
- "protenix.protenij.OuterProductMean",
- "protenix.protenij.MSAStack",
- "protenix.protenij.MSABlock",
- "protenix.protenij.Protenix",
- "protenix.protenij.DiffusionConditioning",
- "protenix.protenij.InputFeatureEmbedder",
- "protenix.backend.relu",
- "protenix.backend.softmax",
- "protenix.protenij.DistogramHead",
- "protenix.backend.LayerNorm",
- "protenix.protenij.Attention",
- "protenix.protenij.Pairformer",
- "protenix.protenij.AdaptiveLayerNorm",
- "protenix.protenij.MSAPairWeightedAveraging",
- "protenix.protenij.DiffusionModel",
- "protenix.protenij.AtomAttentionEncoder",
- "protenix.protenij.TriangleAttention",
- "protenix.protenij.ConditionedTransitionBlock",
- "protenix.protenij.DiffusionTransformerBlock",
- "numpy.dtype",
- "protenix.protenij.AtomTransformer",
- "protenix.protenij.AttentionPairBias",
- "protenix.protenij.AtomAttentionDecoder",
- "protenix.protenij.RelativePositionEncoding",
- "protenix.backend.Sequential",
- "protenix.protenij.ProtenixAttention",
- "protenix.protenij.TriangleMultiplication",
- "protenix.protenij.FourierEmbedding",
- "protenix.backend.Identity",
- "protenix.protenij.InferenceNoiseScheduler",
- "protenix.protenij.PairformerBlock",
- "protenix.protenij.ConfidenceHead",
- "protenix.backend.Linear",
- "jax.ShapeDtypeStruct",
- "protenix.backend.sigmoid",
- "protenix.protenij.MSAModule",
- "protenix.protenij.TemplateEmbedder",
- "protenix.protenij.Transition",
- "protenix.protenij.Dropout",
- "protenix.protenij.DiffusionTransformer"
How to fix it?
39.2 kB
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Re-translate protenix-v2 under jax 0.10 about 1 month ago
protenix_base_20250630_v1.0.0.eqx

1.47 GB
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protenix_base_20250630_v1.0.0.skeleton.pkl

39.1 kB
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Re-translate protenix_base_20250630_v1.0.0 under jax 0.10 about 1 month ago
protenix_base_default_v1.0.0.eqx

1.47 GB
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protenix_base_default_v1.0.0.skeleton.pkl

39.1 kB
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Re-translate protenix_base_default_v1.0.0 under jax 0.10 about 1 month ago
protenix_mini_default_v0.5.0.eqx

536 MB
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protenix_mini_default_v0.5.0.skeleton.pkl

34.2 kB
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Re-translate protenix_mini_default_v0.5.0 under jax 0.10 about 1 month ago
protenix_tiny_default_v0.5.0.eqx

438 MB
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protenix_tiny_default_v0.5.0.skeleton.pkl

34.1 kB
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Re-translate protenix_tiny_default_v0.5.0 under jax 0.10 about 1 month ago

Detected Pickle imports (4)

Detected Pickle imports (40)